PDB_ID PUBMED_CID STRUCTURE TITLE DEPOSITION DATE RELEASE DATE AUTHORS CITATION TITLE JOURNAL YEAR VOLUME FIRST PAGE LAST PAGE 1KUF 12077431 High-resolution Crystal Structure of a Snake Venom Metalloproteinase from Taiwan Habu 2002-01-21 2002-07-03 Huang, K.F.,Chiou, S.H.,Ko, T.P.,Yuann, J.M.,Wang, A.H. The 1.35 A structure of cadmium-substituted TM-3, a snake-venom metalloproteinase from Taiwan habu: elucidation of a TNFalpha-converting enzyme-like active-site structure with a distorted octahedral geometry of cadmium. Acta Crystallogr.,Sect.D 2002 58 1118 1128 1KUI 12071970 Crystal Structure of a Taiwan Habu Venom Metalloproteinase complexed with pEQW. 2002-01-22 2002-07-10 Huang, K.F.,Chiou, S.H.,Ko, T.P.,Wang, A.H. Determinants of the inhibition of a Taiwan habu venom metalloproteinase by its endogenous inhibitors revealed by X-ray crystallography and synthetic inhibitor analogues. Eur.J.Biochem. 2002 269 3047 3056 1IXR 12408833 RuvA-RuvB complex 2002-07-04 2002-11-06 Yamada, K.,Miyata, T.,Tsuchiya, D.,Oyama, T.,Fujiwara, Y.,Ohnishi, T.,Iwasaki, H.,Shinagawa, H.,Ariyoshi, M.,Mayanagi, K.,Morikawa, K. Crystal Structure of the RuvA-RuvB Complex: A Structural Basis for the Holliday Junction Migrating Motor Machinery Mol.Cell 2002 10 671 681 1J33 Crystal structure of CobT from Thermus thermophilus HB8 2003-01-17 2003-02-04 Kunishima, N.,Asada, Y.,Miyano, M. Crystal Structure of CobT from Thermus thermophilus HB8 To be Published 0 0 0 0 1J3B 16239727 Crystal structure of ATP-dependent phosphoenolpyruvate carboxykinase from Thermus thermophilus HB8 2003-01-21 2003-02-11 Sugahara, M.,Ohshima, N.,Ukita, Y.,Sugahara, M.,Kunishima, N. Structure of ATP-dependent phosphoenolpyruvate carboxykinase from Thermus thermophilus HB8 showing the structural basis of induced fit and thermostability. Acta Crystallogr.,Sect.D 2005 61 1500 1507 1J22 12679022 Crystal structure of archaeal XPF/Mus81 homolog, Hef from Pyrococcus furiosus, nuclease domain, selenomet derivative 2002-12-25 2003-04-22 Nishino, T.,Komori, K.,Ishino, Y.,Morikawa, K. X-Ray and Biochemical Anatomy of an Archaeal XPF/Rad1/Mus81 Family Nuclease. Similarity between Its Endonuclease Domain and Restriction Enzymes Structure 2003 11 445 457 1J23 12679022 Crystal structure of archaeal XPF/Mus81 homolog, Hef from Pyrococcus furiosus, nuclease domain 2002-12-25 2003-04-22 Nishino, T.,Komori, K.,Ishino, Y.,Morikawa, K. X-Ray and Biochemical Anatomy of an Archaeal XPF/Rad1/Mus81 Family Nuclease. Similarity between Its Endonuclease Domain and Restriction Enzymes Structure 2003 11 445 457 1J24 12679022 Crystal structure of archaeal XPF/Mus81 homolog, Hef from Pyrococcus furiosus, nuclease domain, Ca cocrystal 2002-12-25 2003-04-22 Nishino, T.,Komori, K.,Ishino, Y.,Morikawa, K. X-Ray and Biochemical Anatomy of an Archaeal XPF/Rad1/Mus81 Family Nuclease. Similarity between Its Endonuclease Domain and Restriction Enzymes Structure 2003 11 445 457 1J25 12679022 Crystal structure of archaeal XPF/Mus81 homolog, Hef from Pyrococcus furiosus, nuclease domain, Mn cocrystal 2002-12-25 2003-04-22 Nishino, T.,Komori, K.,Ishino, Y.,Morikawa, K. X-Ray and Biochemical Anatomy of an Archaeal XPF/Rad1/Mus81 Family Nuclease. Similarity between Its Endonuclease Domain and Restriction Enzymes Structure 2003 11 445 457 1IY8 12621044 Crystal Structure of Levodione Reductase 2002-07-25 2003-05-27 Sogabe, S.,Yoshizumi, A.,Fukami, T.,Shiratori, Y.,Shimizu, S.,Takagi, H.,Nakamori, S.,Wada, M. The Crystal Structure and Stereospecificity of Levodione Reductase from Corynebacterium aquaticum M-13 J.BIOL.CHEM. 2003 278 19387 19395 1IVN 12842470 E.coli Thioesterase I/Protease I/Lysophospholiase L1 2002-03-27 2003-07-08 Lo, Y.-C.,Lin, S.-C.,Shaw, J.-F.,Liaw, Y.-C. Crystal Structure of Escherichia coli Thioesterase I/Protease I/Lysophospholipase L1: Consensus Sequence Blocks Constitute the Catalytic Center of SGNH-hydrolases through a Conserved Hydrogen Bond Network J.Mol.Biol. 2003 330 539 551 1IWM 12839983 Crystal Structure of the Outer Membrane Lipoprotein Receptor, LolB 2002-05-17 2003-07-15 Takeda, K.,Miyatake, H.,Yokota, N.,Matsuyama, S.,Tokuda, H.,Miki, K. Crystal structures of bacterial lipoprotein localization factors, LolA and LolB. Embo J. 2003 22 3199 3209 1UG9 14660574 Crystal Structure of Glucodextranase from Arthrobacter globiformis I42 2003-06-16 2003-12-09 Mizuno, M.,Tonozuka, T.,Suzuki, S.,Uotsu-Tomita, R.,Kamitori, S.,Nishikawa, A.,Sakano, Y. Structural insights into substrate specificity and function of glucodextranase J.Biol.Chem. 2004 279 10575 10583 1UKU 14706845 Crystal Structure of Pyrococcus horikoshii CutA1 Complexed with Cu2+ 2003-09-01 2004-01-13 Tanaka, Y.,Tsumoto, K.,Nakanishi, T.,Yasutake, Y.,Sakai, N.,Yao, M.,Tanaka, I.,Kumagai, I. Structural implications for heavy metal-induced reversible assembly and aggregation of a protein: the case of Pyrococcus horikoshii CutA. Febs Lett. 2004 556 167 174 1V7O 16087889 Alanyl-tRNA synthetase editing domain homologue protein from Pyrococcus horikoshii 2003-12-18 2004-01-13 Sokabe, M.,Okada, A.,Yao, M.,Nakashima, T.,Tanaka, I. Molecular basis of alanine discrimination in editing site Proc.Natl.Acad.Sci.Usa 2005 102 11669 11674 1VCR 15103124 An icosahedral assembly of light-harvesting chlorophyll a/b protein complex from pea thylakoid membranes 2004-03-10 2004-03-30 Hino, T.,Kanamori, E.,Shen, J.R.,Kouyama, T. An icosahedral assembly of the light-harvesting chlorophyll a/b protein complex from pea chloroplast thylakoid membranes. Acta Crystallogr.,Sect.D 2004 60 803 809 1UGR 14717710 Crystal structure of aT109S mutant of Co-type nitrile hydratase 2003-06-17 2004-06-17 Miyanaga, A.,Fushinobu, S.,Ito, K.,Shoun, H.,Wakagi, T. Mutational and structural analysis of cobalt-containing nitrile hydratase on substrate and metal binding Eur.J.Biochem. 2004 271 429 438 1V97 15148401 Crystal Structure of Bovine Milk Xanthine Dehydrogenase FYX-051 bound form 2004-01-21 2004-06-22 Okamoto, K.,Matsumoto, K.,Hille, R.,Eger, B.T.,Pai, E.F.,Nishino, T. The crystal structure of xanthine oxidoreductase during catalysis: Implications for reaction mechanism and enzyme inhibition. Proc.Natl.Acad.Sci.USA 2004 101 7931 7936 1VD5 15148314 Crystal Structure of Unsaturated Glucuronyl Hydrolase, Responsible for the Degradation of Glycosaminoglycan, from Bacillus sp. GL1 at 1.8 A Resolution 2004-03-18 2004-07-13 Itoh, T.,Akao, S.,Hashimoto, W.,Mikami, B.,Murata, K. Crystal Structure of Unsaturated Glucuronyl Hydrolase, Responsible for the Degradation of Glycosaminoglycan, from Bacillus sp. GL1 at 1.8 A Resolution J.Biol.Chem. 2004 279 31804 31812 1WD8 15247907 Calcium free form of human peptidylarginine deiminase type4 (PAD4) 2004-05-12 2004-07-13 Arita, K.,Hashimoto, H.,Shimizu, T.,Nakashima, K.,Yamada, M.,Sato, M. Structural basis for Ca(2+)-induced activation of human PAD4 Nat.Struct.Mol.Biol. 2004 11 777 783 1Q1Y 15382235 Crystal Structures of Peptide Deformylase from Staphylococcus aureus Complexed with Actinonin 2003-07-23 2004-07-23 Yoon, H.J.,Kim, H.L.,Lee, S.K.,Kim, H.W.,Kim, H.W.,Lee, J.Y.,Mikami, B.,Suh, S.W. Crystal structure of peptide deformylase from Staphylococcus aureus in complex with actinonin, a naturally occurring antibacterial agent Proteins 2004 57 639 642 1UJ3 14646147 Crystal structure of a humanized Fab fragment of anti-tissue-factor antibody in complex with tissue factor 2003-07-25 2004-07-25 Ohto, U.,Mizutani, R.,Nakamura, M.,Adachi, H.,Satow, Y. Crystal structure of a humanized Fab fragment of anti-tissue-factor antibody in complex with tissue factor. J.Synchrotron Radiat. 2004 11 105 108 1WDK 15229654 fatty acid beta-oxidation multienzyme complex from Pseudomonas fragi, form I (native2) 2004-05-17 2004-07-27 Ishikawa, M.,Tsuchiya, D.,Oyama, T.,Tsunaka, Y.,Morikawa, K. Structural basis for channelling mechanism of a fatty acid beta-oxidation multienzyme complex Embo J. 2004 23 2745 2754 1PP0 15451675 volvatoxin A2 in monoclinic crystal 2003-06-16 2004-08-24 Lin, S.-C.,Lo, Y.-C.,Lin, J.-Y.,Liaw, Y.-C. Crystal structures and electron micrographs of fungal volvatoxin A2 J.Mol.Biol. 2004 343 477 491 1T1R 15339150 Crystal Structure of the Reductoisomerase Complexed with a Bisphosphonate 2004-04-17 2004-09-14 Yajima, S.,Hara, K.,Sanders, J.M.,Yin, F.,Ohsawa, K.,Wiesner, J.,Jomaa, H.,Oldfield, E. Crystallographic Structures of Two Bisphosphonate:1-Deoxyxylulose-5-Phosphate Reductoisomerase Complexes J.Am.Chem.Soc. 2004 126 10824 10825 1UMJ 15351719 Crystal structure of Pyrococcus horikoshii CutA in the presence of 3M guanidine hydrochloride 2003-10-02 2004-10-05 Tanaka, Y.,Tsumoto, K.,Umetsu, M.,Nakanishi, T.,Yasutake, Y.,Sakai, N.,Yao, M.,Tanaka, I.,Arakawa, T.,Kumagai, I. Structural evidence for guanidine-protein side chain interactions: crystal structure of CutA from Pyrococcus horikoshii in 3M guanidine hydrochloride Biochem.Biophys.Res.Commun. 2004 323 185 191 1V76 15317976 Crystal Structure of Archaeal Ribonuclease P Protein Ph1771p from Pyrococcus horikoshii OT3 2003-12-12 2004-10-05 Numata, T.,Ishimatsu, I.,Kakuta, Y.,Tanaka, I.,Kimura, M. Crystal structure of archaeal ribonuclease P protein Ph1771p from Pyrococcus horikoshii OT3: an archaeal homolog of eukaryotic ribonuclease P protein Rpp29 Rna 2004 10 1423 1432 1VGF 15451675 volvatoxin A2 (diamond crystal form) 2004-04-24 2004-10-05 Lin, S.-C.,Lo, Y.-C.,Lin, J.-Y.,Liaw, Y.-C. Crystal structures and electron micrographs of fungal volvatoxin A2 J.Mol.Biol. 2004 343 477 491 1WTD 15590682 Crystal structure of type II restrcition endonuclease, EcoO109I DNA-free form 2004-11-22 2004-12-14 Hashimoto, H.,Shimizu, T.,Imasaki, T.,Kato, M.,Shichijo, N.,Kita, K.,Sato, M. Crystal structures of type II restriction endonuclease EcoO109I and its complex with cognate DNA J.Biol.Chem. 2005 280 5605 5610 1Y3I 15629142 Crystal Structure of Mycobacterium tuberculosis NAD kinase-NAD complex 2004-11-25 2005-01-18 Mori, S.,Yamasaki, M.,Maruyama, Y.,Momma, K.,Kawai, S.,Hashimoto, W.,Mikami, B.,Murata, K. NAD-binding mode and the significance of intersubunit contact revealed by the crystal structure of Mycobacterium tuberculosis NAD kinase-NAD complex Biochem.Biophys.Res.Commun. 2005 327 500 508 1WOC 15607735 Crystal structure of PriB 2004-08-13 2005-01-25 Shioi, S.,Ose, T.,Maenaka, K.,Shiroishi, M.,Abe, Y.,Kohda, D.,Katayama, T.,Ueda, T. Crystal structure of a biologically functional form of PriB from Escherichia coli reveals a potential single-stranded DNA-binding site Biochem.Biophys.Res.Commun. 2005 326 766 776 1WOM 15632289 Crystal structure of RsbQ 2004-08-21 2005-02-01 Kaneko, T.,Tanaka, N.,Kumasaka, T. Crystal structures of RsbQ, a stress-response regulator in Bacillus subtilis Protein Sci. 2005 14 558 565 1WP9 15642269 Crystal structure of Pyrococcus furiosus Hef helicase domain 2004-08-31 2005-02-01 Nishino, T.,Komori, K.,Tsuchiya, D.,Ishino, Y.,Morikawa, K. Crystal Structure and Functional Implications of Pyrococcus furiosus Hef Helicase Domain Involved in Branched DNA Processing Structure 2005 13 143 153 1WPR 15632289 Crystal structure of RsbQ inhibited by PMSF 2004-09-11 2005-02-01 Kaneko, T.,Tanaka, N.,Kumasaka, T. Crystal structures of RsbQ, a stress-response regulator in Bacillus subtilis Protein Sci. 2005 14 558 565 1WSG 15644213 Co-crystal structure of E.coli RNase HI active site mutant (E48A/D134N*) with Mn2+ 2004-11-05 2005-02-08 Tsunaka, Y.,Takano, K.,Matsumura, H.,Yamagata, Y.,Kanaya, S. Identification of Single Mn(2+) Binding Sites Required for Activation of the Mutant Proteins of E.coli RNase HI at Glu48 and/or Asp134 by X-ray Crystallography J.Mol.Biol. 2005 345 1171 1183 1V6A Crystal Structure of L-lactate dehydrogenase from Cyprinus carpio 2003-11-28 2005-02-15 Watanabe, K.,Motoshima, H. Crystal Structure of L-lactate dehydrogenase from Cyprinus carpio To be Published 0 0 0 0 1UL1 15616578 Crystal structure of the human FEN1-PCNA complex 2003-09-05 2005-03-01 Sakurai, S.,Kitano, K.,Yamaguchi, H.,Okada, K.,Hamada, K.,Fukuda, K.,Uchida, M.,Ohtsuka, E.,Morioka, H.,Hakoshima, T. Structural basis for recruitment of human flap endonuclease 1 to PCNA EMBO J. 2005 24 683 693 1WLS 15735339 Crystal structure of L-asparaginase I homologue protein from Pyrococcus horikoshii 2004-06-29 2005-03-15 Yao, M.,Yasutake, Y.,Morita, H.,Tanaka, I. Structure of the type I L-asparaginase from the hyperthermophilic archaeon Pyrococcus horikoshii at 2.16 angstroms resolution. Acta Crystallogr.,Sect.D 2005 61 294 301 1U8U 15697222 E. coli Thioesterase I/Protease I/Lysophospholiase L1 in complexed with octanoic acid 2004-08-07 2005-04-05 Lo, Y.-C.,Lin, S.-C.,Shaw, J.-F.,Liaw, Y.-C. Substrate specificities of Escherichia coli thioesterase I/protease I/lysophospholipase L1 are governed by its switch loop movement Biochemistry 2005 44 1971 1979 1WDQ 15794648 The role of an inner loop in the catalytic mechanism of soybean beta-amylase 2004-05-17 2005-04-05 Kang, Y.N.,Tanabe, A.,Adachi, M.,Utsumi, S.,Mikami, B. Structural analysis of threonine 342 mutants of soybean beta-amylase: role of a conformational change of the inner loop in the catalytic mechanism. Biochemistry 2005 44 5106 5116 1VD1 Crystal structure of RNase NT in complex with 5'-AMP 2004-03-17 2005-04-26 Kawano, S.,Kakuta, Y.,Kimura, M. Crystal Structure of the Nicotiana glutinosa Ribonuclease NT in Complex with Nucleotide Monophosphates to be published 0 0 0 0 1VD3 Ribonuclease NT in complex with 2'-UMP 2004-03-18 2005-04-26 Kawano, S.,Kakuta, Y.,Kimura, M. Crystal Structure of the Nicotiana glutinosa Ribonuclease NT in Complex with Nucleotide Monophosphates to be published 0 0 0 0 1WYG 15878860 Crystal Structure of a Rat Xanthine Dehydrogenase Triple Mutant (C535A, C992R and C1324S) 2005-02-14 2005-05-31 Nishino, T.,Okamoto, K.,Kawaguchi, Y.,Hori, H.,Matsumura, T.,Eger, B.T.,Pai, E.F.,Nishino, T. Mechanism of the Conversion of Xanthine Dehydrogenase to Xanthine Oxidase: IDENTIFICATION OF THE TWO CYSTEINE DISULFIDE BONDS AND CRYSTAL STRUCTURE OF A NON-CONVERTIBLE RAT LIVER XANTHINE DEHYDROGENASE MUTANT J.Biol.Chem. 2005 280 24888 24894 1V5E Crystal Structure of Pyruvate oxidase containing FAD, from Aerococcus viridans 2003-11-22 2005-06-28 Hossain, M.T.,Suzuki, K.,Yamamoto, T.,Imamura, S.,Sekiguchi, T.,Takenaka, A. Crystal Structure of Pyruvate oxidase containing FAD, from Aerococcus viridans To be Published 0 0 0 0 1VBU 16247799 Crystal structure of native xylanase 10B from Thermotoga maritima 2004-03-02 2005-06-28 Ihsanawati,Kumasaka, T.,Kaneko, T.,Morokuma, C.,Yatsunami, R.,Sato, T.,Nakamura, S.,Tanaka, N. Structural basis of the substrate subsite and the highly thermal stability of xylanase 10B from Thermotoga maritima MSB8 Proteins 2005 61 999 1009 1VDN Crystal Structure Of Yeast Cyclophilin A Complexed With ACE-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin 2004-03-24 2005-06-28 Konno, M.,Shibano, T.,Okudaira, K.,Takahashi, N. Crystal Structure Of Yeast Cyclophilin A Complexed With ACE-Ala-Ala-Pro-Ala-7-Amino-4-Methylcoumarin to be published 0 0 0 0 1VGM 27656296 Crystal Structure of an Isozyme of Citrate Synthase from Sulfolbus tokodaii strain7 2004-04-27 2005-06-28 Murakami, M.,Kouyama, T. Crystal Structures of Two Isozymes of Citrate Synthase from Sulfolobus tokodaii Strain 7. Biochem Res Int 2016 2016 7560919 7560919 1VGP 27656296 Crystal Structure of an Isozyme of Citrate Synthase from Sulfolbus tokodaii strain7 2004-04-28 2005-06-28 Murakami, M.,Kouyama, T. Crystal Structures of Two Isozymes of Citrate Synthase from Sulfolobus tokodaii Strain 7. Biochem Res Int 2016 2016 7560919 7560919 1X1H 15979090 Crystal Structure of Xanthan Lyase (N194A) 2005-04-04 2005-07-19 Maruyama, Y.,Hashimoto, W.,Mikami, B.,Murata, K. Crystal Structure of Bacillus sp. GL1 Xanthan Lyase Complexed with a Substrate: Insights into the Enzyme Reaction Mechanism J.Mol.Biol. 2005 350 974 986 1X1I 15979090 Crystal Structure of Xanthan Lyase (N194A) Complexed with a Product 2005-04-04 2005-07-19 Maruyama, Y.,Hashimoto, W.,Mikami, B.,Murata, K. Crystal Structure of Bacillus sp. GL1 Xanthan Lyase Complexed with a Substrate: Insights into the Enzyme Reaction Mechanism J.Mol.Biol. 2005 350 974 986 1WN7 16019029 Crystal structure of archaeal family B DNA polymerase mutant 2004-07-28 2005-08-02 Kuroita, T.,Matsumura, H.,Yokota, N.,Kitabayashi, M.,Hashimoto, H.,Inoue, T.,Imanaka, T.,Kai, Y. Structural Mechanism for Coordination of Proofreading and Polymerase Activities in Archaeal DNA Polymerases J.Mol.Biol. 2005 351 291 298 1X0I 16023672 Crystal Structure of the Acid Blue Form of Bacteriorhodopsin 2005-03-23 2005-08-02 Okumura, H.,Murakami, M.,Kouyama, T. Crystal Structures of Acid Blue and Alkaline Purple Forms of Bacteriorhodopsin J.Mol.Biol. 2005 351 481 495 1X0K 16023672 Crystal Structure of Bacteriorhodopsin at pH 10 2005-03-23 2005-08-02 Okumura, H.,Murakami, M.,Kouyama, T. Crystal Structures of Acid Blue and Alkaline Purple Forms of Bacteriorhodopsin J.Mol.Biol. 2005 351 481 495 1WKK Crystal Structure of Nucleoside Diphosphate Kinase from Thermus thermophilus HB8 in Complex with GDP 2004-06-01 2005-08-23 Takeishi, S.,Nakagawa, N.,Masui, R.,Kuramitsu, S. Crystal Structure of Nucleoside Diphosphate Kinase from Thermus thermophilus HB8 To be Published 0 0 0 0 1WKL Crystal Structure of Nucleoside Diphosphate Kinase from Thermus thermophilus HB8 in Complex with ATP and ADP 2004-06-01 2005-08-23 Takeishi, S.,Nakagawa, N.,Masui, R.,Kuramitsu, S. Crystal Structure of Nucleoside Diphosphate Kinase from Thermus thermophilus HB8 To be Published 0 0 0 0 1WLZ Crystal structure of DJBP fragment which was obtained by limited proteolysis 2004-07-01 2005-08-23 Honbou, K.,Suzuki, N.,Horiuchi, M.,Taira, T.,Niki, T.,Ariga, H.,Inagaki, F. Crystal Structure of DJBP Fragment which was obtained by Limited Proteolysis To be Published 0 0 0 0 1X0S 16084526 Crystal structure of the 13-cis isomer of bacteriorhodopsin 2005-03-28 2005-08-30 Nishikawa, T.,Murakami, M.,Kouyama, T. Crystal structure of the 13-cis isomer of bacteriorhodopsin in the dark-adapted state. J.Mol.Biol. 2005 352 319 328 1WMB 16325199 Crystal structure of NAD dependent D-3-hydroxybutylate dehydrogenase 2004-07-06 2005-09-06 Ito, K.,Nakajima, Y.,Ichihara, E.,Ogawa, K.,Katayama, N.,Nakashima, K.,Yoshimoto, T. d-3-Hydroxybutyrate Dehydrogenase from Pseudomonas fragi: Molecular Cloning of the Enzyme Gene and Crystal Structure of the Enzyme J.Mol.Biol. 2006 355 722 733 1WOY Crystal structure of methionyl tRNA synthetase Y225F mutant from Thermus thermophilus 2004-08-27 2005-09-13 Konno, M.,Takeda, R.,Nureki, O.,Yokoyama, S. Crystal structure of methionyl tRNA synthetase Y225F mutant from Thermus thermophilus TO BE PUBLISHED 0 0 0 0 1X2I 16084390 Crystal Structure Of Archaeal Xpf/Mus81 Homolog, Hef From Pyrococcus Furiosus, Helix-hairpin-helix Domain 2005-04-24 2005-09-13 Nishino, T.,Komori, K.,Ishino, Y.,Morikawa, K. Structural and Functional Analyses of an Archaeal XPF/Rad1/Mus81 Nuclease: Asymmetric DNA Binding and Cleavage Mechanisms STRUCTURE 2005 13 1183 1192 1VGO 16540121 Crystal Structure of Archaerhodopsin-2 2004-04-28 2005-10-04 Enami, N.,Yoshimura, K.,Murakami, M.,Okumura, H.,Ihara, K.,Kouyama, T. Crystal structures of archaerhodopsin-1 and -2: Common structural motif in archaeal light-driven proton pumps J.Mol.Biol. 2006 358 675 685 1WOZ Crystal structure of uncharacterized protein ST1454 from Sulfolobus tokodaii 2004-08-27 2005-10-04 Sasaki, T.,Tanaka, Y.,Yasutake, Y.,Yao, M.,Tanaka, I.,Tsumoto, K.,Kumagai, I. Crystal structure of the uncharacterized protein ST1454 from Sulfolobus tokodaii. To be Published 0 0 0 0 2CWF 16192274 Crystal Structure of delta1-piperideine-2-carboxylate reductase from Pseudomonas syringae complexed with NADPH 2005-06-20 2005-10-04 Goto, M.,Muramatsu, H.,Mihara, H.,Kurihara, T.,Esaki, N.,Omi, R.,Miyahara, I.,Hirotsu, K. Crystal structures of Delta1-piperideine-2-carboxylate/Delta1-pyrroline-2-carboxylate reductase belonging to a new family of NAD(P)H-dependent oxidoreductases: conformational change, substrate recognition, and stereochemistry of the reaction J.Biol.Chem. 2005 280 40875 40884 2CWH 16192274 Crystal Structure of delta1-piperideine-2-carboxylate reductase from Pseudomonas syringae complexed with NADPH and pyrrole-2-carboxylate 2005-06-20 2005-10-04 Goto, M.,Muramatsu, H.,Mihara, H.,Kurihara, T.,Esaki, N.,Omi, R.,Miyahara, I.,Hirotsu, K. Crystal structures of Delta1-piperideine-2-carboxylate/Delta1-pyrroline-2-carboxylate reductase belonging to a new family of NAD(P)H-dependent oxidoreductases: conformational change, substrate recognition, and stereochemistry of the reaction J.Biol.Chem. 2005 280 40875 40884 1WNZ 16697013 Isoleucyl-tRNA synthetase editing domain complexed with the post-transfer editing substrate analogue, Val-2AA 2004-08-11 2005-10-25 Fukunaga, R.,Yokoyama, S. Structural basis for substrate recognition by the editing domain of isoleucyl-tRNA synthetase J.Mol.Biol. 2006 359 901 912 2D2M 16204001 Structure of an extracellular giant hemoglobin of the gutless beard worm Oligobrachia mashikoi 2005-09-12 2005-10-25 Numoto, N.,Nakagawa, T.,Kita, A.,Sasayama, Y.,Fukumori, Y.,Miki, K. Structure of an extracellular giant hemoglobin of the gutless beard worm Oligobrachia mashikoi. Proc.Natl.Acad.Sci.USA 2005 102 14521 14526 2D2N 16204001 Structure of an extracellular giant hemoglobin of the gutless beard worm Oligobrachia mashikoi 2005-09-12 2005-10-25 Numoto, N.,Nakagawa, T.,Kita, A.,Sasayama, Y.,Fukumori, Y.,Miki, K. Structure of an extracellular giant hemoglobin of the gutless beard worm Oligobrachia mashikoi. Proc.Natl.Acad.Sci.USA 2005 102 14521 14526 1YUM 16009375 Crystal Structure of Nicotinic Acid Mononucleotide Adenylyltransferase from Pseudomonas aeruginosa 2005-02-14 2005-11-08 Yoon, H.J.,Kim, H.L.,Mikami, B.,Suh, S.W. Crystal structure of nicotinic acid mononucleotide adenylyltransferase from Pseudomonas aeruginosa in its Apo and substrate-complexed forms reveals a fully open conformation J.Mol.Biol. 2005 351 258 265 2CWS 16081095 Crystal structure at 1.0 A of alginate lyase A1-II', a member of polysaccharide lyase family-7 2005-06-25 2005-11-15 Yamasaki, M.,Ogura, K.,Hashimoto, W.,Mikami, B.,Murata, K. A Structural Basis for Depolymerization of Alginate by Polysaccharide Lyase Family-7 J.Mol.Biol. 2005 352 11 21 1WOL Crystal Structure of ST0689, an archaeal HEPN homologue 2004-08-20 2005-11-22 Arakawa, T.,Akutsu, J.,Yohda, M. Crystal Structure Analysis of ST0689, an archaeal HEPN protein To be Published 0 0 0 0 2D3I 16301797 Crystal Structure of Aluminum-Bound Ovotransferrin at 2.15 Angstrom Resolution 2005-09-28 2005-11-29 Mizutani, K.,Mikami, B.,Aibara, S.,Hirose, M. Structure of aluminium-bound ovotransferrin at 2.15 Angstroms resolution. Acta Crystallogr.,Sect.D 2005 61 1636 1642 2F5G 16340015 Crystal structure of IS200 transposase 2005-11-25 2005-12-13 Lee, H.H.,Yoon, J.Y.,Kim, H.S.,Kang, J.Y.,Kim, K.H.,Kim, D.J.,Ha, J.Y.,Mikami, B.,Yoon, H.J.,Suh, S.W. Crystal Structure of a Metal Ion-bound IS200 Transposase J.Biol.Chem. 2006 281 4261 4266 1X0R 16342268 Thioredoxin Peroxidase from Aeropyrum pernix K1 2005-03-28 2005-12-20 Nakamura, T.,Yamamoto, T.,Inoue, T.,Matsumura, H.,Kobayashi, A.,Hagihara, Y.,Uegaki, K.,Ataka, M.,Kai, Y.,Ishikawa, K. Crystal structure of thioredoxin peroxidase from aerobic hyperthermophilic archaeon Aeropyrum pernix K1 Proteins 2006 62 822 826 1X1P 16367755 Crystal structure of Tk-RNase HII(1-197)-A(28-42) 2005-04-11 2006-01-17 Takano, K.,Endo, S.,Mukaiyama, A.,Chon, H.,Matsumura, H.,Koga, Y.,Kanaya, S. Structure of amyloid beta fragments in aqueous environments Febs J. 2006 273 150 158 1WZ1 16019026 Crystal structure of the Fv fragment complexed with dansyl-lysine 2005-02-21 2006-01-31 Nakasako, M.,Oka, T.,Mashumo, M.,Takahashi, H.,Shimada, I.,Yamaguchi, Y.,Kato, K.,Arata, Y. Conformational dynamics of complementarity-determining region H3 of an anti-dansyl Fv fragment in the presence of its hapten J.Mol.Biol. 2005 351 627 640 2D9Q 16492764 Crystal Structure of the Human GCSF-Receptor Signaling Complex 2005-12-12 2006-02-07 Tamada, T.,Honjo, E.,Maeda, Y.,Okamoto, T.,Ishibashi, M.,Tokunaga, M.,Kuroki, R. Homodimeric cross-over structure of the human granulocyte colony-stimulating factor (GCSF) receptor signaling complex Proc.Natl.Acad.Sci.Usa 2006 103 3135 3140 1WUA 16406066 The structure of Aplyronine A-actin complex 2004-12-03 2006-02-14 Hirata, K.,Muraoka, S.,Suenaga, K.,Kuroda, T.,Kato, K.,Tanaka, H.,Yamamoto, M.,Takata, M.,Yamada, K.,Kigoshi, H. Structure basis for antitumor effect of aplyronine a J.Mol.Biol. 2006 356 945 954 2D0O 16338403 Structure of diol dehydratase-reactivating factor complexed with ADP and Mg2+ 2005-08-05 2006-02-28 Shibata, N.,Mori, K.,Hieda, N.,Higuchi, Y.,Yamanishi, M.,Toraya, T. Release of a damaged cofactor from a coenzyme B12-dependent enzyme: X-ray structures of diol dehydratase-reactivating factor Structure 2005 13 1745 1754 2D31 16455647 Crystal structure of disulfide-linked HLA-G dimer 2005-09-23 2006-03-14 Shiroishi, M.,Kuroki, K.,Ose, T.,Rasubala, L.,Shiratori, I.,Arase, H.,Tsumoto, K.,Kumagai, I.,Kohda, D.,Maenaka, K. Efficient Leukocyte Ig-like Receptor Signaling and Crystal Structure of Disulfide-linked HLA-G Dimer J.Biol.Chem. 2006 281 10439 10447 1WVM Crystal Structure of Psychrophilic Subtilisin-like Serine Protease APA1 from Antarctic Psychrotroph Pseudoaleromonas sp. AS-11, Complexed with Inhibitor Chymostatin 2004-12-16 2006-03-21 Dong, D.,Watanabe, K. Crystal Structure of Psychrophilic Subtilisin-like Serine Protease from Antarctic Psychrotroph Pseudoalteromonas sp. AS-11 at 0.16 nm resolution To be Published 0 0 0 0 2DEW 16567635 Crystal structure of human peptidylarginine deiminase 4 in complex with histone H3 N-terminal tail including Arg8 2006-02-18 2006-04-11 Arita, K.,Shimizu, T.,Hashimoto, H.,Hidaka, Y.,Yamada, M.,Sato, M. Structural basis for histone N-terminal recognition by human peptidylarginine deiminase 4 Proc.Natl.Acad.Sci.Usa 2006 103 5291 5296 2DEY 16567635 Crystal structure of human peptidylarginine deiminase 4 in complex with histone H4 N-terminal tail including Arg3 2006-02-18 2006-04-11 Arita, K.,Shimizu, T.,Hashimoto, H.,Hidaka, Y.,Yamada, M.,Sato, M. Structural basis for histone N-terminal recognition by human peptidylarginine deiminase 4 Proc.Natl.Acad.Sci.Usa 2006 103 5291 5296 2DNS 17331533 The crystal structure of D-amino acid amidase from Ochrobactrum anthropi SV3 complexed with D-Phenylalanine 2006-04-26 2006-05-09 Okazaki, S.,Suzuki, A.,Komeda, H.,Yamaguchi, S.,Asano, Y.,Yamane, T. Crystal Structure and Functional Characterization of a D-Stereospecific Amino Acid Amidase from Ochrobactrum anthropi SV3, a New Member of the Penicillin-recognizing Proteins J.Mol.Biol. 2007 368 79 91 2CV3 16511165 Crystal structure of porcine pancreatic elastase complexed with a macroclyclic peptide inhibitor 2005-05-31 2006-05-16 Kinoshita, T.,Kitatani, T.,Warizaya, M.,Tada, T. Structure of the complex of porcine pancreatic elastase with a trimacrocyclic peptide inhibitor FR901451 Acta Crystallogr.,Sect.F 2005 61 808 811 2CXQ 16375918 Crystal structure of mouse AMF / S6P complex 2005-06-30 2006-05-23 Tanaka, N.,Haga, A.,Naba, N.,Shiraiwa, K.,Kusakabe, Y.,Hashimoto, K.,Funasaka, T.,Nagase, H.,Raz, A.,Nakamura, K.T. Crystal structures of mouse autocrine motility factor in complex with carbohydrate phosphate inhibitors provide insight into structure-activity relationship of the inhibitors J.Mol.Biol. 2006 356 312 324 2CXS 16375918 Crystal structure of mouse AMF / F6P complex 2005-06-30 2006-05-23 Tanaka, N.,Haga, A.,Naba, N.,Shiraiwa, K.,Kusakabe, Y.,Hashimoto, K.,Funasaka, T.,Nagase, H.,Raz, A.,Nakamura, K.T. Crystal structures of mouse autocrine motility factor in complex with carbohydrate phosphate inhibitors provide insight into structure-activity relationship of the inhibitors J.Mol.Biol. 2006 356 312 324 2FV0 16630576 UGL_D88N/dGlcA-Glc-Rha-Glc 2006-01-28 2006-05-30 Itoh, T.,Hashimoto, W.,Mikami, B.,Murata, K. Substrate recognition by unsaturated glucuronyl hydrolase from Bacillus sp. GL1 Biochem.Biophys.Res.Commun. 2006 344 253 262 2FV1 16630576 UGL_D88N/dGlcA-GlcNAc 2006-01-28 2006-05-30 Itoh, T.,Hashimoto, W.,Mikami, B.,Murata, K. Substrate recognition by unsaturated glucuronyl hydrolase from Bacillus sp. GL1 Biochem.Biophys.Res.Commun. 2006 344 253 262 2DI4 16762831 Crystal structure of the FtsH protease domain 2006-03-28 2006-06-27 Suno, R.,Niwa, H.,Tsuchiya, D.,Zhang, X.,Yoshida, M.,Morikawa, K. Structure of the Whole Cytosolic Region of ATP-Dependent Protease FtsH Mol.Cell 2006 22 575 585 2DI4 16762831 Crystal structure of the FtsH protease domain 2006-03-28 2006-06-27 Suno, R.,Niwa, H.,Tsuchiya, D.,Zhang, X.,Yoshida, M.,Morikawa, K. Structure of the Whole Cytosolic Region of ATP-Dependent Protease FtsH Mol.Cell 2006 22 575 585 1X0U Crystal Structure of the carboxyl transferase subunit of putative PCC of Sulfolobus tokodaii 2005-03-29 2006-07-04 Kakuta, Y.,Sueda, S.,Kondo, H. Crystal Structure of the carboxyl transferase subunit of putative PCC of Sulfolobus tokodaii To be Published 0 0 0 0 2DRW 17331533 The crystal structutre of D-amino acid amidase from Ochrobactrum anthropi SV3 2006-06-15 2006-07-04 Okazaki, S.,Suzuki, A.,Komeda, H.,Yamaguchi, S.,Asano, Y.,Yamane, T. Crystal Structure and Functional Characterization of a D-Stereospecific Amino Acid Amidase from Ochrobactrum anthropi SV3, a New Member of the Penicillin-recognizing Proteins J.Mol.Biol. 2007 368 79 91 2CWR 18582475 Crystal structure of chitin biding domain of chitinase from Pyrococcus furiosus 2005-06-24 2006-07-11 Nakamura, T.,Mine, S.,Hagihara, Y.,Ishikawa, K.,Ikegami, T.,Uegaki, K. Tertiary structure and carbohydrate recognition by the chitin-binding domain of a hyperthermophilic chitinase from Pyrococcus furiosus. J.Mol.Biol. 2008 381 670 680 2D4C 16763557 Crystal structure of the endophilin BAR domain mutant 2005-10-13 2006-07-11 Masuda, M.,Takeda, S.,Sone, M.,Ohki, T.,Mori, H.,Kamioka, Y.,Mochizuki, N. Endophilin BAR domain drives membrane curvature by two newly identified structure-based mechanisms Embo J. 2006 25 2889 2897 1X19 16797589 Crystal structure of BchU involved in bacteriochlorophyll c biosynthesis 2005-04-02 2006-07-18 Wada, K.,Yamaguchi, H.,Harada, J.,Niimi, K.,Osumi, S.,Saga, Y.,Oh-Oka, H.,Tamiaki, H.,Fukuyama, K. Crystal Structures of BchU, a Methyltransferase Involved in Bacteriochlorophyll c Biosynthesis, and its Complex with S-adenosylhomocysteine: Implications for Reaction Mechanism. J.Mol.Biol. 2006 360 839 849 1X19 16797589 Crystal structure of BchU involved in bacteriochlorophyll c biosynthesis 2005-04-02 2006-07-18 Wada, K.,Yamaguchi, H.,Harada, J.,Niimi, K.,Osumi, S.,Saga, Y.,Oh-Oka, H.,Tamiaki, H.,Fukuyama, K. Crystal Structures of BchU, a Methyltransferase Involved in Bacteriochlorophyll c Biosynthesis, and its Complex with S-adenosylhomocysteine: Implications for Reaction Mechanism. J.Mol.Biol. 2006 360 839 849 1X1D 16797589 Crystal structure of BchU complexed with S-adenosyl-L-homocysteine and Zn-bacteriopheophorbide d 2005-04-04 2006-07-18 Wada, K.,Yamaguchi, H.,Harada, J.,Niimi, K.,Osumi, S.,Saga, Y.,Oh-Oka, H.,Tamiaki, H.,Fukuyama, K. Crystal Structures of BchU, a Methyltransferase Involved in Bacteriochlorophyll c Biosynthesis, and its Complex with S-adenosylhomocysteine: Implications for Reaction Mechanism. J.Mol.Biol. 2006 360 839 849 2A4X 16756991 Crystal Structure Of Mitomycin C-Binding Protein Complexed with Metal-Free Bleomycin A2 2005-06-30 2006-07-18 Danshiitsoodol, N.,de Pinho, C.A.,Matoba, Y.,Kumagai, T.,Sugiyama, M. The Mitomycin C (MMC)-binding Protein from MMC-producing Microorganisms Protects from the Lethal Effect of Bleomycin: Crystallographic Analysis to Elucidate the Binding Mode of the Antibiotic to the Protein J.Mol.Biol. 2006 360 398 408 2D0B 16343535 Crystal structure of Bst-RNase HIII in complex with Mg2+ 2005-07-31 2006-07-18 Chon, H.,Matsumura, H.,Koga, Y.,Takano, K.,Kanaya, S. Crystal structure and structure-based mutational analyses of RNase HIII from Bacillus stearothermophilus: a new type 2 RNase H with TBP-like substrate-binding domain at the N terminus J.Mol.Biol. 2006 356 165 178 2DKE 16782089 Crystal structure of substrate-free form of PcyA 2006-04-10 2006-07-25 Hagiwara, Y.,Sugishima, M.,Takahashi, Y.,Fukuyama, K. Induced-fitting and electrostatic potential change of PcyA upon substrate binding demonstrated by the crystal structure of the substrate-free form Febs Lett. 2006 580 3823 3828 2AHF 16893885 Unsaturated glucuronyl hydrolase mutant D88N 2005-07-28 2006-08-15 Itoh, T.,Hashimoto, W.,Mikami, B.,Murata, K. Crystal Structure of Unsaturated Glucuronyl Hydrolase Complexed with Substrate: MOLECULAR INSIGHTS INTO ITS CATALYTIC REACTION MECHANISM J.Biol.Chem. 2006 281 29807 29816 2AHG 16893885 Unsaturated glucuronyl hydrolase mutant D88N with dGlcA-GalNAc 2005-07-28 2006-08-15 Itoh, T.,Hashimoto, W.,Mikami, B.,Murata, K. Crystal Structure of Unsaturated Glucuronyl Hydrolase Complexed with Substrate: MOLECULAR INSIGHTS INTO ITS CATALYTIC REACTION MECHANISM J.Biol.Chem. 2006 281 29807 29816 2D5J 16893885 Unsaturated Glucuronyl Hydrolase Triggers Hydration of Vinyl Ether Group but not of Glycosidic Bond 2005-11-02 2006-08-15 Itoh, T.,Hashimoto, W.,Mikami, B.,Murata, K. Crystal Structure of Unsaturated Glucuronyl Hydrolase Complexed with Substrate: MOLECULAR INSIGHTS INTO ITS CATALYTIC REACTION MECHANISM J.Biol.Chem. 2006 281 29807 29816 2DKN 16905772 Crystal structure of the 3-alpha-hydroxysteroid dehydrogenase from Pseudomonas sp. B-0831 complexed with NADH 2006-04-12 2006-08-15 Nakamura, S.,Oda, M.,Kataoka, S.,Ueda, S.,Uchiyama, S.,Yoshida, T.,Kobayashi, Y.,Ohkubo, T. Apo- and Holo-structures of 3{alpha}-Hydroxysteroid Dehydrogenase from Pseudomonas sp. B-0831: LOOP-HELIX TRANSITION INDUCED BY COENZYME BINDING J.Biol.Chem. 2006 281 31876 31884 2GH4 16870154 YteR/D143N/dGalA-Rha 2006-03-25 2006-08-29 Itoh, T.,Ochiai, A.,Mikami, B.,Hashimoto, W.,Murata, K. Structure of unsaturated rhamnogalacturonyl hydrolase complexed with substrate Biochem.Biophys.Res.Commun. 2006 347 1021 1029 2DCM 16914159 The Crystal Structure of S603A Mutated Prolyl Tripeptidyl Aminopeptidase Complexed with Substrate 2006-01-09 2006-09-19 Ito, K.,Nakajima, Y.,Xu, Y.,Yamada, N.,Onohara, Y.,Ito, T.,Matsubara, F.,Kabashima, T.,Nakayama, K.,Yoshimoto, T. Crystal Structure and Mechanism of Tripeptidyl Activity of Prolyl Tripeptidyl Aminopeptidase from Porphyromonas gingivalis J.Mol.Biol. 2006 362 228 240 2B9U Crystal structure of dTDP-4-dehydrorhamnose 3,5-epimerase from sulfolobus tokodaii 2005-10-13 2006-10-13 Rajakannan, V.,Kondo, K.,Mizushima, T.,Suzuki, A.,Yamane, T. Crystal structure of dTDP-4-dehydrorhamnose 3,5-epimerase from sulfolobus tokodaii TO BE PUBLISHED 0 0 0 0 2D7G 17464287 Crystal structure of the aa complex of the N-terminal domain of PriA 2005-11-21 2006-11-07 Sasaki, K.,Ose, T.,Okamoto, N.,Maenaka, K.,Tanaka, T.,Masai, H.,Saito, M.,Shirai, T.,Kohda, D. Structural basis of the 3'-end recognition of a leading strand in stalled replication forks by PriA. EMBO J. 2007 26 2584 2593 2D7H 17464287 Crystal structure of the ccc complex of the N-terminal domain of PriA 2005-11-21 2006-11-07 Sasaki, K.,Ose, T.,Okamoto, N.,Maenaka, K.,Tanaka, T.,Masai, H.,Saito, M.,Shirai, T.,Kohda, D. Structural basis of the 3'-end recognition of a leading strand in stalled replication forks by PriA. EMBO J. 2007 26 2584 2593 2DWL 17464287 Crystal structure of the PriA protein complexed with oligonucleotides 2006-08-15 2006-11-07 Sasaki, K.,Ose, T.,Okamoto, N.,Maenaka, K.,Tanaka, T.,Masai, H.,Saito, M.,Shirai, T.,Kohda, D. Structural basis of the 3'-end recognition of a leading strand in stalled replication forks by PriA. EMBO J. 2007 26 2584 2593 2DWM 17464287 Crystal structure of the PriA protein complexed with oligonucleotides 2006-08-15 2006-11-07 Sasaki, K.,Ose, T.,Okamoto, N.,Maenaka, K.,Tanaka, T.,Masai, H.,Saito, M.,Shirai, T.,Kohda, D. Structural basis of the 3'-end recognition of a leading strand in stalled replication forks by PriA. EMBO J. 2007 26 2584 2593 2DWN 17464287 Crystal structure of the PriA protein complexed with oligonucleotides 2006-08-15 2006-11-07 Sasaki, K.,Ose, T.,Okamoto, N.,Maenaka, K.,Tanaka, T.,Masai, H.,Saito, M.,Shirai, T.,Kohda, D. Structural basis of the 3'-end recognition of a leading strand in stalled replication forks by PriA. EMBO J. 2007 26 2584 2593 2D32 Crystal Structure of Michaelis Complex of gamma-Glutamylcysteine Synthetase 2005-09-25 2006-11-14 Hibi, T.,Nakayama, M.,Nii, H.,Kurokawa, Y.,Katano, H.,Oda, J. Structural basis of efficient coupling peptide ligation and ATP hydrolysis by gamma-gluatamylcysteine synthetase To be Published 0 0 0 0 2D4V 17634983 Crystal structure of NAD dependent isocitrate dehydrogenase from Acidithiobacillus thiooxidans 2005-10-24 2006-11-14 Imada, K.,Tamura, T.,Takenaka, R.,Kobayashi, I.,Namba, K.,Inagaki, K. Structure and quantum chemical analysis of NAD+-dependent isocitrate dehydrogenase: hydride transfer and co-factor specificity Proteins 2008 70 63 71 2D5F 20215054 Crystal Structure of Recombinant Soybean Proglycinin A3B4 subunit, its Comparison with Mature Glycinin A3B4 subunit, Responsible for Hexamer Assembly 2005-11-01 2006-11-14 Tandang-Silvas, M.R.,Fukuda, T.,Fukuda, C.,Prak, K.,Cabanos, C.,Kimura, A.,Itoh, T.,Mikami, B.,Utsumi, S.,Maruyama, N. Conservation and divergence on plant seed 11S globulins based on crystal structures. Biochim.Biophys.Acta 2010 0 0 0 2D8L 16781735 Crystal Structure of Unsaturated Rhamnogalacturonyl Hydrolase in complex with dGlcA-GalNAc 2005-12-06 2006-11-14 Itoh, T.,Ochiai, A.,Mikami, B.,Hashimoto, W.,Murata, K. A novel glycoside hydrolase family 105: the structure of family 105 unsaturated rhamnogalacturonyl hydrolase complexed with a disaccharide in comparison with family 88 enzyme complexed with the disaccharide J.Mol.Biol. 2006 360 573 585 2EVX Crystal structure of pumpkin seed globulin 2005-11-01 2006-11-14 Itoh, T.,Fukuda, T.,Mikami, B.,Utsumi, S. Crystal Structure of Pumpkin Seed Globulin To be Published 0 0 0 0 2DOO 16937423 The structure of IMP-1 complexed with the detecting reagent (DansylC4SH) by a fluorescent probe 2006-05-01 2006-11-28 Kurosaki, H.,Yamaguchi, Y.,Yasuzawa, H.,Jin, W.,Yamagata, Y.,Arakawa, Y. Probing, inhibition, and crystallographic characterization of metallo-beta-lactamase (IMP-1) with fluorescent agents containing dansyl and thiol groups Chemmedchem 2006 1 969 972 2E0X 17135273 Crystal Structure of Gamma-glutamyltranspeptidase from Escherichia coli (monoclinic form) 2006-10-16 2006-11-28 Okada, T.,Suzuki, H.,Wada, K.,Kumagai, H.,Fukuyama, K. Crystal structure of the gamma-glutamyltranspeptidase precursor protein from Escherichia coli. Structural changes upon autocatalytic processing and implications for the maturation mechanism J.Biol.Chem. 2007 282 2433 2439 2DU2 17007814 Crystal Structure Analysis of the L-Lactate Oxidase 2006-07-19 2006-12-05 Umena, Y.,Yorita, K.,Matsuoka, T.,Kita, A.,Fukui, K.,Morimoto, Y. The crystal structure of L-lactate oxidase from Aerococcus viridans at 2.1A resolution reveals the mechanism of strict substrate recognition Biochem.Biophys.Res.Commun. 2006 350 249 256 2E1E 17148451 Crystal structure of the HRDC Domain of Human Werner Syndrome Protein, WRN 2006-10-25 2006-12-12 Kitano, K.,Yoshihara, N.,Hakoshima, T. Crystal structure of the HRDC domain of human Werner syndrome protein, WRN J.Biol.Chem. 2007 282 2717 2728 2E1F 17148451 Crystal structure of the HRDC Domain of Human Werner Syndrome Protein, WRN 2006-10-25 2006-12-12 Kitano, K.,Yoshihara, N.,Hakoshima, T. Crystal structure of the HRDC domain of human Werner syndrome protein, WRN J.Biol.Chem. 2007 282 2717 2728 2D54 Crystal Structure of Methionyl tRNA Synthetase Y225A Mutant from Thermus Thermophilus 2005-10-28 2006-12-19 Konno, M.,Takeda, R.,Takasaka, R.,Mori, Y.,Ishii, R.,Yokoyama, S. Y225F/Amutation for Met-tRNA synthetase reveals importance of hydrophobic circumstance To be Published 0 0 0 0 2E24 17223699 crystal structure of a mutant (R612A) of xanthan lyase 2006-11-07 2007-01-30 Maruyama, Y.,Mikami, B.,Hashimoto, W.,Murata, K. A Structural Factor Responsible for Substrate Recognition by Bacillus sp. GL1 Xanthan Lyase that Acts Specifically on Pyruvated Side Chains of Xanthan Biochemistry 2007 46 781 791 2DSK 17183162 Crystal structure of catalytic domain of hyperthermophilic chitinase from Pyrococcus furiosus 2006-06-30 2007-02-06 Nakamura, T.,Mine, S.,Hagihara, Y.,Ishikawa, K.,Uegaki, K. Structure of the catalytic domain of the hyperthermophilic chitinase from Pyrococcus furiosus ACTA CRYSTALLOGR.,SECT.F 2007 63 7 11 2DFH 17510955 Crystal structure of Tk-RNase HII(1-212)-C 2006-03-01 2007-03-06 Takano, K.,Katagiri, Y.,Mukaiyama, A.,Chon, H.,Matsumura, H.,Koga, Y.,Kanaya, S. Conformational contagion in a protein: Structural properties of a chameleon sequence Proteins 2007 68 617 625 2DFI 17510955 Crystal structure of Pf-MAP(1-292)-C 2006-03-01 2007-03-06 Takano, K.,Katagiri, Y.,Mukaiyama, A.,Chon, H.,Matsumura, H.,Koga, Y.,Kanaya, S. Conformational contagion in a protein: Structural properties of a chameleon sequence Proteins 2007 68 617 625 2EFU 18323628 The crystal structure of D-amino acid amidase from Ochrobactrum anthropi SV3 complexed with L-phenylalanine 2007-02-26 2007-03-06 Okazaki, S.,Suzuki, A.,Mizushima, T.,Komeda, H.,Asano, Y.,Yamane, T. Structures of D-amino-acid amidase complexed with L-phenylalanine and with L-phenylalanine amide: insight into the D-stereospecificity of D-amino-acid amidase from Ochrobactrum anthropi SV3. Acta Crystallogr.,Sect.D 2008 64 331 334 2DGJ 18334223 Crystal structure of EbhA (756-1003 domain) from Staphylococcus aureus 2006-03-14 2007-03-20 Tanaka, Y.,Sakamoto, S.,Kuroda, M.,Goda, S.,Gao, Y.-G.,Tsumoto, K.,Hiragi, Y.,Yao, M.,Watanabe, N.,Ohta, T.,Tanaka, I. A helical string of alternately connected three-helix bundles for the cell wall-associated adhesion protein Ebh from Staphylococcus aureus Structure 2008 16 488 496 2EGK 17396155 Crystal Structure of Tamalin PDZ-Intrinsic Ligand Fusion Protein 2007-03-01 2007-05-08 Sugi, T.,Oyama, T.,Muto, T.,Nakanishi, S.,Morikawa, K.,Jingami, H. Crystal structures of autoinhibitory PDZ domain of Tamalin: implications for metabotropic glutamate receptor trafficking regulation Embo J. 2007 26 2192 2205 2UWM 17502103 C-TERMINAL DOMAIN(WH2-WH4) OF ELONGATION FACTOR SELB IN COMPLEX WITH SECIS RNA 2007-03-22 2007-05-08 Ose, T.,Soler, N.,Rasubala, L.,Kuroki, K.,Kohda, D.,Fourmy, D.,Yoshizawa, S.,Maenaka, K. Structural Basis for Dynamic Interdomain Movement and RNA Recognition of the Selenocysteine-Specific Elongation Factor Selb. Structure 2007 15 577 0 2DPH Crystal Structure of Formaldehyde dismutase 2006-05-11 2007-05-29 Hasegawa, T.,Yamano, A.,Miura, K.,Katsube, Y.,Yanase, H.,Kato, N. The X-ray crystal structure of formaldehyde dismutase at 2.3 A resolution Acta Crystallogr.,Sect.A 2002 58 0 0 2DQL 19032344 Crystal structure of the circadian clock associated protein Pex from anabaena 2006-05-29 2007-05-29 Kurosawa, S.,Murakami, R.,Onai, K.,Morishita, M.,Hasegawa, D.,Iwase, R.,Uzumaki, T.,Hayashi, F.,Kitajima-Ihara, T.,Sakata, S.,Murakami, M.,Kouyama, T.,Ishiura, M. Functionally important structural elements of the cyanobacterial clock-related protein Pex. Genes Cells 2009 14 1 16 2P9J Crystal structure of AQ2171 from Aquifex aeolicus 2007-03-26 2007-05-29 Yang, H.,Chen, L.,Agari, Y.,Ebihara, A.,Shinkai, A.,Kuramitsu, S.,Yokoyama, S.,Rose, J.P.,Wang, B.-C. Crystal structure of AQ2171 from Aquifex aeolicus To be Published 0 0 0 0 2DLC 17576676 Crystal structure of the ternary complex of yeast tyrosyl-tRNA synthetase 2006-04-18 2007-06-12 Tsunoda, M.,Kusakabe, Y.,Tanaka, N.,Ohno, S.,Nakamura, M.,Senda, T.,Moriguchi, T.,Asai, N.,Sekine, M.,Yokogawa, T.,Nishikawa, K.,Nakamura, K.T. Structural basis for recognition of cognate tRNA by tyrosyl-tRNA synthetase from three kingdoms. Nucleic Acids Res. 2007 35 4289 4300 2DQA 17631496 Crystal Structure of Tapes japonica Lysozyme 2006-05-24 2007-06-12 Goto, T.,Abe, Y.,Kakuta, Y.,Takeshita, K.,Imoto, T.,Ueda, T. Crystal Structure of Tapes japonica Lysozyme with Substrate Analogue: STRUCTURAL BASIS OF THE CATALYTIC MECHANISM AND MANIFESTATION OF ITS CHITINASE ACTIVITY ACCOMPANIED BY QUATERNARY STRUCTURAL CHANGE J.Biol.Chem. 2007 282 27459 27467 2E56 17569869 Crystal structure of human MD-2 2006-12-19 2007-06-26 Ohto, U.,Fukase, K.,Miyake, K.,Satow, Y. Crystal structures of human MD-2 and its complex with antiendotoxic lipid IVa. Science 2007 316 1632 1634 2E59 17569869 Crystal structure of human MD-2 in complex with lipid IVa 2006-12-19 2007-06-26 Ohto, U.,Fukase, K.,Miyake, K.,Satow, Y. Crystal structures of human MD-2 and its complex with antiendotoxic lipid IVa Science 2007 316 1632 1634 2EB4 17559873 Crystal structure of apo-HpcG 2007-02-07 2007-07-17 Izumi, A.,Rea, D.,Adachi, T.,Unzai, S.,Park, S.Y.,Roper, D.I.,Tame, J.R.H. Structure and Mechanism of HpcG, a Hydratase in the Homoprotocatechuate Degradation Pathway of Escherichia coli J.Mol.Biol. 2007 370 899 911 2EB5 17559873 Crystal structure of HpcG complexed with oxalate 2007-02-07 2007-07-17 Izumi, A.,Rea, D.,Adachi, T.,Unzai, S.,Park, S.Y.,Roper, D.I.,Tame, J.R.H. Structure and Mechanism of HpcG, a Hydratase in the Homoprotocatechuate Degradation Pathway of Escherichia coli J.Mol.Biol. 2007 370 899 911 2E0J 17586772 Mutant Human Ribonuclease 1 (R31L, R32L) 2006-10-10 2007-08-28 Yamada, H.,Tamada, T.,Kosaka, M.,Miyata, K.,Fujiki, S.,Tano, M.,Moriya, M.,Yamanishi, M.,Honjo, E.,Tada, H.,Ino, T.,Yamaguchi, H.,Futami, J.,Seno, M.,Nomoto, T.,Hirata, T.,Yoshimura, M.,Kuroki, R. 'Crystal lattice engineering,' an approach to engineer protein crystal contacts by creating intermolecular symmetry: crystallization and structure determination of a mutant human RNase 1 with a hydrophobic interface of leucines Protein Sci. 2007 16 1389 1397 2E0L 17586772 Mutant Human Ribonuclease 1 (Q28L, R31L, R32L) 2006-10-10 2007-08-28 Yamada, H.,Tamada, T.,Kosaka, M.,Miyata, K.,Fujiki, S.,Tano, M.,Moriya, M.,Yamanishi, M.,Honjo, E.,Tada, H.,Ino, T.,Yamaguchi, H.,Futami, J.,Seno, M.,Nomoto, T.,Hirata, T.,Yoshimura, M.,Kuroki, R. 'Crystal lattice engineering,' an approach to engineer protein crystal contacts by creating intermolecular symmetry: crystallization and structure determination of a mutant human RNase 1 with a hydrophobic interface of leucines Protein Sci. 2007 16 1389 1397 2E0M 17586772 Mutant Human Ribonuclease 1 (T24L, Q28L, R31L, R32L) 2006-10-10 2007-08-28 Yamada, H.,Tamada, T.,Kosaka, M.,Miyata, K.,Fujiki, S.,Tano, M.,Moriya, M.,Yamanishi, M.,Honjo, E.,Tada, H.,Ino, T.,Yamaguchi, H.,Futami, J.,Seno, M.,Nomoto, T.,Hirata, T.,Yoshimura, M.,Kuroki, R. 'Crystal lattice engineering,' an approach to engineer protein crystal contacts by creating intermolecular symmetry: crystallization and structure determination of a mutant human RNase 1 with a hydrophobic interface of leucines Protein Sci. 2007 16 1389 1397 2E0O 17586772 Mutant Human Ribonuclease 1 (V52L, D53L, N56L, F59L) 2006-10-10 2007-08-28 Yamada, H.,Tamada, T.,Kosaka, M.,Miyata, K.,Fujiki, S.,Tano, M.,Moriya, M.,Yamanishi, M.,Honjo, E.,Tada, H.,Ino, T.,Yamaguchi, H.,Futami, J.,Seno, M.,Nomoto, T.,Hirata, T.,Yoshimura, M.,Kuroki, R. 'Crystal lattice engineering,' an approach to engineer protein crystal contacts by creating intermolecular symmetry: crystallization and structure determination of a mutant human RNase 1 with a hydrophobic interface of leucines Protein Sci. 2007 16 1389 1397 2E2R 17761695 Crystal structure of human estrogen-related receptor gamma ligand binding domain complex with bisphenol A 2006-11-16 2007-09-11 Matsushima, A.,Kakuta, Y.,Teramoto, T.,Koshiba, T.,Liu, X.,Okada, H.,Tokunaga, T.,Kawabata, S.,Kimura, M.,Shimohigashi, Y. Structural Evidence for Endocrine Disruptor Bisphenol A Binding to Human Nuclear Receptor ERR{gamma} J.Biochem.(Tokyo) 2007 142 517 524 2E9L 17595169 Crystal Structure of human Cytosolic Neutral beta-Glycosylceramidase (Klotho-related Prote:KLrP) complex with Glucose and fatty acids 2007-01-25 2007-09-11 Hayashi, Y.,Okino, N.,Kakuta, Y.,Shikanai, T.,Tani, M.,Narimatsu, H.,Ito, M. Klotho-related protein is a novel cytosolic neutral beta-glycosylceramidase. J.Biol.Chem. 2007 282 30889 30900 2E9M 17595169 Crystal Structure of human Cytosolic Neutral beta-Glycosylceramidase (Klotho-related Prote:KLrP) complex with Galactose and fatty acids 2007-01-25 2007-09-11 Hayashi, Y.,Okino, N.,Kakuta, Y.,Shikanai, T.,Tani, M.,Narimatsu, H.,Ito, M. Klotho-related protein is a novel cytosolic neutral beta-glycosylceramidase. J.Biol.Chem. 2007 282 30889 30900 2E0P 17905739 The crystal structure of Cel44A 2006-10-11 2007-09-18 Kitago, Y.,Karita, S.,Watanabe, N.,Kamiya, M.,Aizawa, T.,Sakka, K.,Tanaka, I. Crystal structure of Cel44A, a glycoside hydrolase family 44 endoglucanase from Clostridium thermocellum. J.Biol.Chem. 2007 282 35703 35711 2E3T 17301076 Crystal structure of rat xanthine oxidoreductase mutant (W335A and F336L) 2006-11-28 2007-09-25 Asai, R.,Nishino, T.,Matsumura, T.,Okamoto, K.,Igarashi, K.,Pai, E.F.,Nishino, T. Two mutations convert mammalian xanthine oxidoreductase to highly superoxide-productive xanthine oxidase J.Biochem.(Tokyo) 2007 141 525 534 2YV1 Crystal Structure of Succinyl-CoA Synthetase Alpha Chain from Methanocaldococcus jannaschii DSM 2661 2007-04-06 2007-10-09 Niwa, H.,Kuramitsu, S.,Yokoyama, S. Crystal Structure of Succinyl-CoA Synthetase Alpha Chain from Methanocaldococcus jannaschii DSM 2661 To be Published 0 0 0 0 2Z8R 17947240 Crystal structure of rhamnogalacturonan lyase YesW at 1.40 A resolution 2007-09-10 2007-10-16 Ochiai, A.,Itoh, T.,Maruyama, Y.,Kawamata, A.,Mikami, B.,Hashimoto, W.,Murata, K. A Novel Structural Fold in Polysaccharide Lyases: BACILLUS SUBTILIS FAMILY 11 RHAMNOGALACTURONAN LYASE YesW WITH AN EIGHT-BLADED -PROPELLER J.Biol.Chem. 2007 282 37134 37145 2E0C 30662370 crystal structure of isocitrate dehydrogenase from Sulfolobus tokodaii strain7 at 2.0 A resolution 2006-10-06 2007-10-30 Kondo, H.,Murakami, M. Crystal Structures of the Putative Isocitrate Dehydrogenase fromSulfolobus tokodaiiStrain 7 in the Apo and NADP+-Bound Forms. Archaea 2018 2018 7571984 7571984 2Z8X 17923123 Crystal structure of extracellular lipase from Pseudomonas sp. MIS38 2007-09-11 2007-10-30 Angkawidjaja, C.,You, D.J.,Matsumura, H.,Kuwahara, K.,Koga, Y.,Takano, K.,Kanaya, S. Crystal structure of a family I.3 lipase from Pseudomonas sp. MIS38 in a closed conformation FEBS Lett. 2007 581 5060 5064 2Z8Z 17923123 Crystal structure of a platinum-bound S445C mutant of Pseudomonas sp. MIS38 lipase 2007-09-13 2007-10-30 Angkawidjaja, C.,You, D.J.,Matsumura, H.,Kuwahara, K.,Koga, Y.,Takano, K.,Kanaya, S. Crystal structure of a family I.3 lipase from Pseudomonas sp. MIS38 in a closed conformation FEBS Lett. 2007 581 5060 5064 2Z04 Crystal structure of phosphoribosylaminoimidazole carboxylase ATPase subunit from Aquifex aeolicus 2007-05-06 2007-11-06 Okada, K.,Tamura, S.,Baba, S.,Kanagawa, M.,Kawai, G.,Sampei, G. Crystal structure of phosphoribosylaminoimidazole carboxylase ATPase subunit from Aquifex aeolicus To be Published 0 0 0 0 2Z9U 17989071 Crystal structure of pyridoxamine-pyruvate aminotransferase from Mesorhizobium loti at 2.0 A resolution 2007-09-26 2007-11-06 Yoshikane, Y.,Yokochi, N.,Yamasaki, M.,Mizutani, K.,Ohnishi, K.,Mikami, B.,Hayashi, H.,Yagi, T. Crystal structure of pyridoxamine-pyruvate aminotransferase from Mesorhizobium loti MAFF303099 J.Biol.Chem. 2008 283 1120 1127 2Z9V 17989071 Crystal structure of pyridoxamine-pyruvate aminotransferase complexed with pyridoxamine 2007-09-26 2007-11-06 Yoshikane, Y.,Yokochi, N.,Yamasaki, M.,Mizutani, K.,Ohnishi, K.,Mikami, B.,Hayashi, H.,Yagi, T. Crystal structure of pyridoxamine-pyruvate aminotransferase from Mesorhizobium loti MAFF303099 J.Biol.Chem. 2008 283 1120 1127 2Z9W 17989071 Crystal structure of pyridoxamine-pyruvate aminotransferase complexed with pyridoxal 2007-09-26 2007-11-06 Yoshikane, Y.,Yokochi, N.,Yamasaki, M.,Mizutani, K.,Ohnishi, K.,Mikami, B.,Hayashi, H.,Yagi, T. Crystal structure of pyridoxamine-pyruvate aminotransferase from Mesorhizobium loti MAFF303099 J.Biol.Chem. 2008 283 1120 1127 2Z9X 17989071 Crystal structure of pyridoxamine-pyruvate aminotransferase complexed with pyridoxyl-L-alanine 2007-09-26 2007-11-06 Yoshikane, Y.,Yokochi, N.,Yamasaki, M.,Mizutani, K.,Ohnishi, K.,Mikami, B.,Hayashi, H.,Yagi, T. Crystal structure of pyridoxamine-pyruvate aminotransferase from Mesorhizobium loti MAFF303099 J.Biol.Chem. 2008 283 1120 1127 2OKX 17936784 Crystal structure of GH78 family rhamnosidase of Bacillus SP. GL1 AT 1.9 A 2007-01-17 2007-11-13 Cui, Z.,Maruyama, Y.,Mikami, B.,Hashimoto, W.,Murata, K. Crystal Structure of Glycoside Hydrolase Family 78 alpha-L-Rhamnosidase from Bacillus sp. GL1 J.Mol.Biol. 2007 374 384 398 2OKX 17936784 Crystal structure of GH78 family rhamnosidase of Bacillus SP. GL1 AT 1.9 A 2007-01-17 2007-11-13 Cui, Z.,Maruyama, Y.,Mikami, B.,Hashimoto, W.,Murata, K. Crystal Structure of Glycoside Hydrolase Family 78 alpha-L-Rhamnosidase from Bacillus sp. GL1 J.Mol.Biol. 2007 374 384 398 2Z1J 17761696 Crystal structure of E.coli RNase HI surface charged mutant(Q4R/T40E/Q72H/Q76K/Q80E/T92K/Q105K/Q113R/Q115K/N143K/T145K) 2007-05-08 2007-11-13 You, D.-J.,Fukuchi, S.,Nishikawa, K.,Koga, Y.,Takano, K.,Kanaya, S. Protein Thermostabilization Requires a Fine-tuned Placement of Surface-charged Residues J.Biochem.(Tokyo) 2007 142 507 516 2Z2X 17706669 Crystal structure of mature form of Tk-subtilisin 2007-05-29 2007-12-04 Tanaka, S.,Matsumura, H.,Koga, Y.,Takano, K.,Kanaya, S. Four new crystal structures of Tk-subtilisin in unautoprocessed, autoprocessed and mature forms: insight into structural changes during maturation J.Mol.Biol. 2007 372 1055 1069 2Z2Y 17706669 Crystal structure of autoprocessed form of Tk-subtilisin 2007-05-29 2007-12-04 Tanaka, S.,Matsumura, H.,Koga, Y.,Takano, K.,Kanaya, S. Four new crystal structures of Tk-subtilisin in unautoprocessed, autoprocessed and mature forms: insight into structural changes during maturation J.Mol.Biol. 2007 372 1055 1069 2Z2Z 17706669 Crystal structure of unautoprocessed form of Tk-subtilisin soaked by 10mM CaCl2 2007-05-29 2007-12-04 Tanaka, S.,Matsumura, H.,Koga, Y.,Takano, K.,Kanaya, S. Four new crystal structures of Tk-subtilisin in unautoprocessed, autoprocessed and mature forms: insight into structural changes during maturation J.Mol.Biol. 2007 372 1055 1069 2Z30 17706669 Crystal structure of complex form between mat-Tk-subtilisin and Tk-propeptide 2007-05-29 2007-12-04 Tanaka, S.,Matsumura, H.,Koga, Y.,Takano, K.,Kanaya, S. Four new crystal structures of Tk-subtilisin in unautoprocessed, autoprocessed and mature forms: insight into structural changes during maturation J.Mol.Biol. 2007 372 1055 1069 2ZA1 17981823 Crystal Structure of orotidine 5'-monophosphate decarboxylase complexed with orotidine 5'-monophosphate from P.falciparum 2007-09-26 2007-12-04 Tokuoka, K.,Kusakari, Y.,Krungkrai, S.R.,Matsumura, H.,Kai, Y.,Krungkrai, J.,Horii, T.,Inoue, T. Structural Basis for the Decarboxylation of Orotidine 5'-Monophosphate (OMP) by Plasmodium Falciparum OMP Decarboxylase J.BIOCHEM.(TOKYO) 2008 143 69 78 2ZA3 17981823 Crystal Structure of orotidine 5'-monophosphate decarboxylase complexed with uridine 5'-monophosphate from P.falciparum 2007-09-26 2007-12-04 Tokuoka, K.,Kusakari, Y.,Krungkrai, S.R.,Matsumura, H.,Kai, Y.,Krungkrai, J.,Horii, T.,Inoue, T. Structural Basis for the Decarboxylation of Orotidine 5'-Monophosphate (OMP) by Plasmodium Falciparum OMP Decarboxylase J.Biochem.(Tokyo) 2008 143 69 78 2E5B 19819904 Crystal structure of Human NMPRTase as free-form 2006-12-20 2007-12-25 Takahashi, R.,Nakamura, S.,Nakazawa, T.,Minoura, K.,Yoshida, T.,Nishi, Y.,Kobayashi, Y.,Ohkubo, T. Structure and reaction mechanism of human nicotinamide phosphoribosyltransferase J.Biochem. 2010 147 95 107 2E5C 19819904 Crystal structure of Human NMPRTase complexed with 5'-phosphoribosyl-1'-pyrophosphate 2006-12-20 2007-12-25 Takahashi, R.,Nakamura, S.,Nakazawa, T.,Minoura, K.,Yoshida, T.,Nishi, Y.,Kobayashi, Y.,Ohkubo, T. Structure and reaction mechanism of human nicotinamide phosphoribosyltransferase J.Biochem. 2010 147 95 107 2E5D 19819904 Crystal structure of Human NMPRTase complexed with nicotinamide 2006-12-20 2007-12-25 Takahashi, R.,Nakamura, S.,Nakazawa, T.,Minoura, K.,Yoshida, T.,Nishi, Y.,Kobayashi, Y.,Ohkubo, T. Structure and reaction mechanism of human nicotinamide phosphoribosyltransferase J.Biochem. 2010 147 95 107 2YXW 17804014 The deletion mutant of Multicopper Oxidase CueO 2007-04-27 2008-01-01 Kataoka, K.,Komori, H.,Ueki, Y.,Konno, Y.,Kamitaka, Y.,Kurose, S.,Tsujimura, S.,Higuchi, Y.,Kano, K.,Seo, D.,Sakurai, T. Structure and function of the engineered multicopper oxidase CueO from Escherichia coli--deletion of the methionine-rich helical region covering the substrate-binding site J.Mol.Biol. 2007 373 141 152 2Z57 17988685 Crystal structure of G56E-propeptide:S324A-subtilisin complex 2007-06-29 2008-01-01 Pulido, M.A.,Tanaka, S.,Sringiew, C.,You, D.J.,Matsumura, H.,Koga, Y.,Takano, K.,Kanaya, S. Requirement of left-handed glycine residue for high stability of the Tk-subtilisin propeptide as revealed by mutational and crystallographic analyses J.Mol.Biol. 2007 374 1359 1373 2E5M 30662370 Crystal structure of isocitrate dehydrogenase from Sulfolobus tokodaii strain 7 2006-12-22 2008-01-15 Kondo, H.,Murakami, M. Crystal Structures of the Putative Isocitrate Dehydrogenase fromSulfolobus tokodaiiStrain 7 in the Apo and NADP+-Bound Forms. Archaea 2018 2018 7571984 7571984 2YRF 18156470 Crystal structure of 5-methylthioribose 1-phosphate isomerase from Bacillus subtilis complexed with sulfate ion 2007-04-02 2008-01-22 Tamura, H.,Saito, Y.,Ashida, H.,Inoue, T.,Kai, Y.,Yokota, A.,Matsumura, H. Crystal structure of 5-methylthioribose 1-phosphate isomerase product complex from Bacillus subtilis: Implications for catalytic mechanism Protein Sci. 2008 17 126 135 2EA7 18461964 Crystal Structure of Adzuki Bean 7S Globulin-1 2007-01-30 2008-02-05 Fukuda, T.,Maruyama, N.,Salleh, M.R.,Mikami, B.,Utsumi, S. Characterization and crystallography of recombinant 7S globulins of Adzuki bean and structure-function relationships with 7S globulins of various crops. J.Agric.Food Chem. 2008 56 4145 4153 2EAA 18461964 Crystal Structure of Adzuki Bean 7S Globulin-3 2007-01-31 2008-02-05 Fukuda, T.,Maruyama, N.,Salleh, M.R.,Mikami, B.,Utsumi, S. Characterization and crystallography of recombinant 7S globulins of Adzuki bean and structure-function relationships with 7S globulins of various crops. J.Agric.Food Chem. 2008 56 4145 4153 2ZBI 18189419 Crystal structure of a bacterial cell-surface flagellin 2007-10-22 2008-02-05 Maruyama, Y.,Momma, M.,Mikami, B.,Hashimoto, W.,Murata, K. Crystal structure of a novel bacterial cell-surface flagellin binding to a polysaccharide Biochemistry 2008 47 1393 1402 2ZBL 18328504 Functional annotation of Salmonella enterica yihS-encoded protein 2007-10-24 2008-02-05 Itoh, T.,Mikami, B.,Hashimoto, W.,Murata, K. Crystal structure of YihS in complex with D-mannose: structural annotation of Escherichia coli and Salmonella enterica yihS-encoded proteins to an aldose-ketose isomerase J.Mol.Biol. 2008 377 1443 1459 2E8Y Crystal structure of pullulanase type I from Bacillus subtilis str. 168 2007-01-24 2008-02-19 Malle, D.,Iwamoto, H.,Katsuya, Y.,Utsumi, S.,Mikami, B. Crystal structure of pullulanase type I from Bacillus subtilis str. 168 in complex with maltose and alpha-cyclodextrin To be Published 0 0 0 0 2E8Z Crystal structure of pullulanase type I from Bacillus subtilis str. 168 complexed with alpha-cyclodextrin 2007-01-24 2008-02-19 Malle, D.,Iwamoto, H.,Katsuya, Y.,Utsumi, S.,Mikami, B. Crystal structure of pullulanase type I from Bacillus subtilis str. 168 in complex with maltose and alpha-cyclodextrin To be Published 0 0 0 0 2EF8 Crystal structure of C.EcoT38IS 2007-02-21 2008-02-26 Kawanishi, Y.,Mikami, B.,Kita, K. Crystal structure of C.EcoT38IS To be published 0 0 0 0 2YV0 17944939 Structural and Thermodynamic Analyses of E. coli ribonuclease HI Variant with Quintuple Thermostabilizing Mutations 2007-04-06 2008-03-18 Haruki, M.,Tanaka, M.,Motegi, T.,Tadokoro, T.,Koga, Y.,Takano, K.,Kanaya, S. Structural and thermodynamic analyses of Escherichia coli RNase HI variant with quintuple thermostabilizing mutations. Febs J. 2007 274 5815 5825 2Z4T 17962295 Crystal Structure of Vibrionaceae Photobacterium sp. JT-ISH-224 2,6-sialyltransferase in a Ternary Complex with Donor Product CMP and Accepter Substrate Lactose 2007-06-25 2008-04-08 Kakuta, Y.,Okino, N.,Kajiwara, H.,Ichikawa, M.,Takakura, Y.,Ito, M.,Yamamoto, T. Crystal structure of Vibrionaceae Photobacterium sp. JT-ISH-224 alpha2,6-sialyltransferase in a ternary complex with donor product CMP and acceptor substrate lactose: catalytic mechanism and substrate recognition Glycobiology 2008 18 66 73 2PJZ The crystal structure of putative Cobalt transport ATP-binding protein (cbiO-2), ST1066 2007-04-17 2008-04-22 Hirata, K.,Hasegawa, K.,Ebihara, A.,Yamamoto, M.,Yokoyama, S. The crystal structure of putative Cobalt transport ATP-binding protein (cbiO-2), ST1066 To be Published 0 0 0 0 2Z73 18480818 Crystal structure of squid rhodopsin 2007-08-13 2008-05-13 Murakami, M.,Kouyama, T. Crystal structure of squid rhodopsin. Nature 2008 453 363 367 2Z42 Crystal Structure of Family 7 Alginate Lyase A1-II' from Sphingomonas sp. A1 2007-06-12 2008-05-27 Ogura, K.,Yamasaki, M.,Hashimoto, W.,Mikami, B.,Murata, K. Substrate Recognition by Family 7 Alginagte Lyase from Sphingomonas sp. A1 To be published 0 0 0 0 2ZA9 Crystal Structure of Alginate lyase A1-II' N141C/N199C 2007-10-02 2008-05-27 Ogura, K.,Yamasaki, M.,Mikami, B.,Hashimoto, W.,Murata, K. Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1 To be Published 0 0 0 0 2ZAA Crystal Structure of Family 7 Alginate Lyase A1-II' H191N/Y284F in Complex with Substrate (GGMG) 2007-10-02 2008-05-27 Ogura, K.,Yamasaki, M.,Mikami, B.,Hashimoto, W.,Murata, K. Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1 To be Published 0 0 0 0 2ZAB Crystal Structure of Family 7 Alginate Lyase A1-II' Y284F in Cmplex with Product (GGG) 2007-10-02 2008-05-27 Ogura, K.,Yamasaki, M.,Mikami, B.,Hashimoto, W.,Murata, K. Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1 To be Published 0 0 0 0 2ZAC Crystal Structure of Family 7 Alginate Lyase A1-II' Y284F in Complex with Product (MMG) 2007-10-02 2008-05-27 Ogura, K.,Yamasaki, M.,Mikami, B.,Hashimoto, W.,Murata, K. Substrate Recognition in Tunnel of Family 7 Alginate Lyase from Sphingomonas sp. A1 To be Published 0 0 0 0 2ZCT 18436649 Oxidation of archaeal peroxiredoxin involves a hypervalent sulfur intermediate 2007-11-12 2008-05-27 Nakamura, T.,Yamamoto, T.,Abe, M.,Matsumura, H.,Hagihara, Y.,Goto, T.,Yamaguchi, T.,Inoue, T. Oxidation of archaeal peroxiredoxin involves a hypervalent sulfur intermediate Proc.Natl.Acad.Sci.Usa 2008 105 6238 6242 2Z2T Crystal structure of the complex between gp41 fragment N36 and fusion inhibitor SC34EK 2007-05-28 2008-06-03 Nishikawa, H.,Nakamura, S.,Kodama, E.,Ito, S.,Kajiwara, K.,Izumi, K.,Sakagami, Y.,Oishi, S.,Ohkubo, T.,Kobayashi, Y.,Fujii, N.,Matsuoka, M. Intrahelical Salt-bridges in a-Helical Peptide Enhances its Binding to the Target: A New Design for HIV-1 Fusion Inhibitors To be Published 0 0 0 0 2ZOY 16166084 The multi-drug binding transcriptional repressor CgmR (CGL2612 protein) from C.glutamicum 2008-06-20 2008-07-08 Itou, H.,Okada, U.,Suzuki, H.,Yao, M.,Wachi, M.,Watanabe, N.,Tanaka, I. The CGL2612 protein from Corynebacterium glutamicum is a drug resistance-related transcriptional repressor: structural and functional analysis of a newly identified transcription factor from genomic DNA analysis J.Biol.Chem. 2005 280 38711 38719 2Z72 18647345 New Structure Of Cold-Active Protein Tyrosine Phosphatase At 1.1 Angstrom 2007-08-10 2008-07-29 Tsuruta, H.,Mikami, B.,Yamamoto, C.,Yamagata, H. The role of group bulkiness in the catalytic activity of psychrophile cold-active protein tyrosine phosphatase Febs J. 2008 275 4317 4328 2ZBM 18647345 Crystal Structure of I115M Mutant Cold-Active Protein Tyrosine Phosphatase 2007-10-24 2008-07-29 Tsuruta, H.,Mikami, B.,Yamamoto, C.,Yamagata, H. The role of group bulkiness in the catalytic activity of psychrophile cold-active protein tyrosine phosphatase Febs J. 2008 275 4317 4328 2Z7C 18323660 Crystal structure of chromatin protein alba from hyperthermophilic archaeon pyrococcus horikoshii 2007-08-17 2008-08-05 Hada, K.,Nakashima, T.,Osawa, T.,Shimada, H.,Kakuta, Y.,Kimura, M. Crystal structure and functional analysis of an archaeal chromatin protein Alba from the hyperthermophilic archaeon Pyrococcus horikoshii OT3. Biosci.Biotechnol.Biochem. 2008 72 749 758 2ZPO Crystal Structure of Green Turtle Egg White Ribonuclease 2008-07-25 2008-08-19 Katekaew, S.,Kakuta, Y.,Torikata, T.,Kimura, M.,Yoneda, K.,Araki, T. Crystal Structure of Newly Found Green Turtle Egg White Ribonuclease To be Published 0 0 0 0 2RGK 18328504 Functional annotation of Escherichia coli yihS-encoded protein 2007-10-03 2008-08-26 Itoh, T.,Mikami, B.,Hashimoto, W.,Murata, K. Crystal structure of YihS in complex with D-mannose: structural annotation of Escherichia coli and Salmonella enterica yihS-encoded proteins to an aldose-ketose isomerase J.Mol.Biol. 2008 377 1443 1459 2ZPY 18753140 Crystal structure of the mouse radxin FERM domain complexed with the mouse CD44 cytoplasmic peptide 2008-07-31 2008-08-26 Mori, T.,Kitano, K.,Terawaki, S.,Maesaki, R.,Fukami, Y.,Hakoshima, T. Structural basis for CD44 recognition by ERM proteins J.Biol.Chem. 2008 283 29602 29612 2Z6V Crystal structure of sulfotransferase STF9 from Mycobacterium avium 2007-08-09 2008-09-09 Hassain, M.M.,Moriizumi, Y.,Tanaka, S.,Kimura, M.,Kakuta, Y. Crystal structure of sulfotransferase STF9 from Mycobacterium avium To be Published 0 0 0 0 2ZOX 18662675 Crystal Structure of the Covalent Intermediate of Human Cytosolic beta-Glucosidase 2008-06-17 2008-09-30 Noguchi, J.,Hayashi, Y.,Baba, Y.,Okino, N.,Kimura, M.,Ito, M.,Kakuta, Y. Crystal structure of the covalent intermediate of human cytosolic beta-glucosidase Biochem.Biophys.Res.Commun. 2008 374 549 552 2ZBS 18582436 Crystal structure of human estrogen-related receptor gamma ligand binding domain apo form 2007-10-27 2008-10-07 Matsushima, A.,Teramoto, T.,Okada, H.,Liu, X.,Tokunaga, T.,Kakuta, Y.,Shimohigashi, Y. ERRgamma tethers strongly bisphenol A and 4-alpha-cumylphenol in an induced-fit manner Biochem.Biophys.Res.Commun. 2008 373 408 413 2ZAE 18929577 Crystal structure of protein Ph1601p in complex with protein Ph1771p of archaeal ribonuclease P from Pyrococcus horikoshii OT3 2007-10-04 2008-10-14 Honda, T.,Kakuta, Y.,Kimura, K.,Saho, J.,Kimura, M. Structure of an archaeal homolog of the human protein complex Rpp21-Rpp29 that is a key core component for the assembly of active ribonuclease P. J.Mol.Biol. 2008 384 652 662 2ZS0 18834142 Structural Basis for the Heterotropic and Homotropic Interactions of Invertebrate Giant Hemoglobin 2008-09-02 2008-10-21 Numoto, N.,Nakagawa, T.,Kita, A.,Sasayama, Y.,Fukumori, Y.,Miki, K. Structural Basis for the Heterotropic and Homotropic Interactions of Invertebrate Giant Hemoglobin Biochemistry 2008 47 11231 11238 2ZFE 18930734 Crystal structure of bacteriorhodopsin-xenon complex 2007-12-31 2008-11-11 Hayakawa, N.,Kasahara, T.,Hasegawa, D.,Yoshimura, K.,Murakami, M.,Kouyama, T. Effect of xenon binding to a hydrophobic cavity on the proton pumping cycle in bacteriorhodopsin J.Mol.Biol. 2008 384 812 823 2ZPT 18977225 Crystal structure of mouse sulfotransferase SULT1D1 complex with PAP 2008-07-28 2008-11-18 Teramoto, T.,Sakakibara, Y.,Inada, K.,Kurogi, K.,Liu, M.-C.,Suiko, M.,Kimura, M.,Kakuta, Y. Crystal structure of mSULT1D1, a mouse catecholamine sulfotransferase Febs Lett. 2008 582 3909 3914 2ZJ6 18987131 Crystal structure of D337A mutant of Pseudomonas sp. MIS38 lipase 2008-02-29 2008-12-02 Kuwahara, K.,Angkawidjaja, C.,Matsumura, H.,Koga, Y.,Takano, K.,Kanaya, S. Importance of the Ca2+-binding sites in the N-catalytic domain of a family I.3 lipase for activity and stability Protein Eng.Des.Sel. 2008 21 737 744 2ZJ7 18987131 Crystal structure of D157A mutant of Pseudomonas sp. MIS38 lipase 2008-02-29 2008-12-02 Kuwahara, K.,Angkawidjaja, C.,Matsumura, H.,Koga, Y.,Takano, K.,Kanaya, S. Importance of the Ca2+-binding sites in the N-catalytic domain of a family I.3 lipase for activity and stability Protein Eng.Des.Sel. 2008 21 737 744 2ZVP 19073143 Crystal structure of mouse cytosolic sulfotransferase mSULT1D1 complex with PAP and p-nitrophenol 2008-11-14 2008-12-30 Teramoto, T.,Sakakibara, Y.,Liu, M.-C.,Suiko, M.,Kimura, M.,Kakuta, Y. Structural basis for the broad range substrate specificity of a novel mouse cytosolic sulfotransferase--mSULT1D1 Biochem.Biophys.Res.Commun. 2009 379 76 80 2ZVQ 19073143 Crystal structure of mouse cytosolic sulfotransferase mSULT1D1 complex with PAP and alpha-naphthol 2008-11-14 2008-12-30 Teramoto, T.,Sakakibara, Y.,Liu, M.-C.,Suiko, M.,Kimura, M.,Kakuta, Y. Structural basis for the broad range substrate specificity of a novel mouse cytosolic sulfotransferase--mSULT1D1 Biochem.Biophys.Res.Commun. 2009 379 76 80 2ZUX 19193638 Crystal structure of rhamnogalacturonan lyase YesW complexed with rhamnose 2008-10-28 2009-02-03 Ochiai, A.,Itoh, T.,Mikami, B.,Hashimoto, W.,Murata, K. Structural determinants responsible for substrate recognition and mode of action in family 11 polysaccharide lyases J.Biol.Chem. 2009 284 10181 10189 2ZUY 19193638 Crystal structure of exotype rhamnogalacturonan lyase YesX 2008-10-28 2009-02-03 Ochiai, A.,Itoh, T.,Mikami, B.,Hashimoto, W.,Murata, K. Structural determinants responsible for substrate recognition and mode of action in family 11 polysaccharide lyases J.Biol.Chem. 2009 284 10181 10189 2ZVU 19154182 Crystal structure of rat heme oxygenase-1 in complex with ferrous verdoheme 2008-11-21 2009-02-03 Sato, H.,Sugishima, M.,Sakamoto, H.,Higashimoto, Y.,Shimokawa, C.,Fukuyama, K.,Palmer, G.,Noguchi, M. Crystal structure of rat haem oxygenase-1 in complex with ferrous verdohaem: presence of a hydrogen-bond network on the distal side Biochem.J. 2009 419 339 345 2ZYC 19351587 Crystal structure of peptidoglycan hydrolase from Sphingomonas sp. A1 2009-01-19 2009-02-03 Hashimoto, W.,Ochiai, A.,Momma, K.,Itoh, T.,Mikami, B.,Maruyama, Y.,Murata, K. Crystal structure of the glycosidase family 73 peptidoglycan hydrolase FlgJ Biochem.Biophys.Res.Commun. 2009 381 16 21 2ZYC 19351587 Crystal structure of peptidoglycan hydrolase from Sphingomonas sp. 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Structural Basis for Novel Interactions between Human Translesion Synthesis Polymerases and Proliferating Cell Nuclear Antigen J.Biol.Chem. 2009 284 10552 10560 2ZK0 18977231 Human peroxisome proliferator-activated receptor gamma ligand binding domain 2008-03-12 2009-02-24 Waku, T.,Shiraki, T.,Oyama, T.,Fujimoto, Y.,Maebara, K.,Kamiya, N.,Jingami, H.,Morikawa, K. Structural insight into PPARgamma activation through covalent modification with endogenous fatty acids J.Mol.Biol. 2009 385 188 199 2ZK1 18977231 Human peroxisome proliferator-activated receptor gamma ligand binding domain complexed with 15-deoxy-delta12,14-prostaglandin J2 2008-03-12 2009-02-24 Waku, T.,Shiraki, T.,Oyama, T.,Fujimoto, Y.,Maebara, K.,Kamiya, N.,Jingami, H.,Morikawa, K. Structural insight into PPARgamma activation through covalent modification with endogenous fatty acids J.Mol.Biol. 2009 385 188 199 2ZK2 18977231 Human peroxisome proliferator-activated receptor gamma ligand binding domain complexed with glutathion conjugated 15-deoxy-delta12,14-prostaglandin J2 2008-03-12 2009-02-24 Waku, T.,Shiraki, T.,Oyama, T.,Fujimoto, Y.,Maebara, K.,Kamiya, N.,Jingami, H.,Morikawa, K. Structural insight into PPARgamma activation through covalent modification with endogenous fatty acids J.Mol.Biol. 2009 385 188 199 2ZK3 18977231 Human peroxisome proliferator-activated receptor gamma ligand binding domain complexed with 8-oxo-eicosatetraenoic acid 2008-03-12 2009-02-24 Waku, T.,Shiraki, T.,Oyama, T.,Fujimoto, Y.,Maebara, K.,Kamiya, N.,Jingami, H.,Morikawa, K. Structural insight into PPARgamma activation through covalent modification with endogenous fatty acids J.Mol.Biol. 2009 385 188 199 2ZK4 18977231 Human peroxisome proliferator-activated receptor gamma ligand binding domain complexed with 15-oxo-eicosatetraenoic acid 2008-03-12 2009-02-24 Waku, T.,Shiraki, T.,Oyama, T.,Fujimoto, Y.,Maebara, K.,Kamiya, N.,Jingami, H.,Morikawa, K. Structural insight into PPARgamma activation through covalent modification with endogenous fatty acids J.Mol.Biol. 2009 385 188 199 2ZK5 18977231 Human peroxisome proliferator-activated receptor gamma ligand binding domain complexed with nitro-233 2008-03-12 2009-02-24 Waku, T.,Shiraki, T.,Oyama, T.,Fujimoto, Y.,Maebara, K.,Kamiya, N.,Jingami, H.,Morikawa, K. Structural insight into PPARgamma activation through covalent modification with endogenous fatty acids J.Mol.Biol. 2009 385 188 199 2ZK6 20717101 Human peroxisome proliferator-activated receptor gamma ligand binding domain complexed with C8-BODIPY 2008-03-12 2009-02-24 Waku, T.,Shiraki, T.,Oyama, T.,Maebara, K.,Nakamori, R.,Morikawa, K. The nuclear receptor PPARgamma individually responds to serotonin- and fatty acid-metabolites Embo J. 2010 29 3395 3407 2ZRQ 18951896 Crystal structure of S324A-subtilisin 2008-08-28 2009-03-03 Tanaka, S.,Takeuchi, Y.,Matsumura, H.,Koga, Y.,Takano, K.,Kanaya, S. Crystal structure of Tk-subtilisin folded without propeptide: requirement of propeptide for acceleration of folding Febs Lett. 2008 582 3875 3878 2ZK9 21926168 Crystal Structure of Protein-glutaminase 2008-03-13 2009-03-17 Hashizume, R.,Maki, Y.,Mizutani, K.,Takahashi, N.,Matsubara, H.,Sugita, A.,Sato, K.,Yamaguchi, S.,Mikami, B. Crystal structures of protein glutaminase and its pro forms converted into enzyme-substrate complex J.Biol.Chem. 2011 286 38691 38702 2ZTS 19274727 Crystal structure of KaiC-like protein PH0186 from hyperthermophilic archaea Pyrococcus horikoshii OT3 2008-10-08 2009-03-24 Kang, H.-J.,Kubota, K.,Ming, H.,Miyazono, K.,Tanokura, M. Crystal structure of KaiC-like protein PH0186 from hyperthermophilic archaea Pyrococcus horikoshii OT3 Proteins 2009 75 1035 1039 2ZM7 19476493 Structure of 6-Aminohexanoate-dimer Hydrolase, S112A/G181D Mutant Complexed with 6-Aminohexanoate-dimer 2008-04-14 2009-04-07 Kawashima, Y.,Ohki, T.,Shibata, N.,Higuchi, Y.,Wakitani, Y.,Matsuura, Y.,Nakata, Y.,Takeo, M.,Kato, D.,Negoro, S. Molecular design of a nylon-6 byproduct-degrading enzyme from a carboxylesterase with a beta-lactamase fold Febs J. 2009 276 2547 2556 2ZWN 19285076 Crystal structure of the novel two-domain type laccase from a metagenome 2008-12-17 2009-04-07 Komori, H.,Miyazaki, K.,Higuchi, Y. 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Snapshot of a Michaelis complex in a sulfuryl transfer reaction: Crystal structure of a mouse sulfotransferase, mSULT1D1, complexed with donor substrate and accepter substrate Biochem.Biophys.Res.Commun. 2009 383 83 87 2ZYU 19344693 Crystal structure of mouse cytosolic sulfotransferase mSULT1D1 complex with PAPS and p-nitrophenyl sulfate 2009-01-29 2009-04-21 Teramoto, T.,Sakakibara, Y.,Liu, M.-C.,Suiko, M.,Kimura, M.,Kakuta, Y. Snapshot of a Michaelis complex in a sulfuryl transfer reaction: Crystal structure of a mouse sulfotransferase, mSULT1D1, complexed with donor substrate and accepter substrate Biochem.Biophys.Res.Commun. 2009 383 83 87 2ZYV 19344693 Crystal structure of mouse cytosolic sulfotransferase mSULT1D1 complex with PAPS/PAP and p-nitrophenol 2009-01-29 2009-04-21 Teramoto, T.,Sakakibara, Y.,Liu, M.-C.,Suiko, M.,Kimura, M.,Kakuta, Y. 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The 2.1-A crystal structure of native neuroserpin reveals unique structural elements that contribute to conformational instability J.Mol.Biol. 2009 388 11 20 2ZMY Crystal structure of the met2-form of the copper-bound tyrosinase in complex with a caddie protein from Streptomyces castaneoglobisporus obtained by soaking in cupric sulfate solution for 80 hours 2008-04-21 2009-05-05 Matoba, Y.,Yoshitsu, H.,Jeon, H.-J.,Oda, K.,Noda, M.,Kumagai, T.,Sugiyama, M. X-Ray Snapshots of a Hydroxylation Mechanism of Tyrosinase To be Published 0 0 0 0 2ZMZ The 1.37-A crystal structure of the hydroxylamine-induced deoxy-form of the copper-bound tyrosinase in complex with a caddie protein from Streptomyces castaneoglobisporus 2008-04-21 2009-05-05 Matoba, Y.,Yoshitsu, H.,Jeon, H.-J.,Oda, K.,Noda, M.,Kumagai, T.,Sugiyama, M. 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Identification of the interactions critical for propeptide-catalyzed folding of Tk-subtilisin J.Mol.Biol. 2009 394 306 319 3A3P 19766655 Crystal structure of complex between E201A/SA-subtilisin and Tk-propeptide 2009-06-15 2009-08-18 Tanaka, S.,Matsumura, H.,Koga, Y.,Takano, K.,Kanaya, S. Identification of the interactions critical for propeptide-catalyzed folding of Tk-subtilisin J.Mol.Biol. 2009 394 306 319 3H7G 19652809 Apo-FR with AU ions 2009-04-27 2009-09-15 Suzuki, M.,Abe, M.,Ueno, T.,Abe, S.,Goto, T.,Toda, Y.,Akita, T.,Yamada, Y.,Watanabe, Y. Preparation and catalytic reaction of Au/Pd bimetallic nanoparticles in apo-ferritin Chem.Commun.(Camb.) 2009 32 4871 4873 3H7G 19652809 Apo-FR with AU ions 2009-04-27 2009-09-15 Suzuki, M.,Abe, M.,Ueno, T.,Abe, S.,Goto, T.,Toda, Y.,Akita, T.,Yamada, Y.,Watanabe, Y. Preparation and catalytic reaction of Au/Pd bimetallic nanoparticles in apo-ferritin Chem.Commun.(Camb.) 2009 32 4871 4873 2ZVT 19101554 Cys285Ser mutant PPARgamma ligand-binding domain complexed with 15-deoxy-delta12,14-prostaglandin J2 2008-11-19 2009-10-06 Waku, T.,Shiraki, T.,Oyama, T.,Morikawa, K. Atomic structure of mutant PPARgamma LBD complexed with 15d-PGJ2: novel modulation mechanism of PPARgamma/RXRalpha function by covalently bound ligands Febs Lett. 2009 583 320 324 3A0N 19846561 Crystal structure of D-glucuronic acid-bound alginate lyase vAL-1 from Chlorella virus 2009-03-23 2009-10-20 Ogura, K.,Yamasaki, M.,Yamada, T.,Mikami, B.,Hashimoto, W.,Murata, K. Crystal structure of family 14 polysaccharide lyase with pH-dependent modes of action J.Biol.Chem. 2009 284 35572 35579 3GNE 19846561 Crystal structure of alginate lyase vAL-1 from Chlorella virus 2009-03-17 2009-10-20 Ogura, K.,Yamasaki, M.,Yamada, T.,Mikami, B.,Hashimoto, W.,Murata, K. Crystal structure of family 14 polysaccharide lyase with pH-dependent modes of action J.Biol.Chem. 2009 284 35572 35579 3IM0 19846561 Crystal structure of Chlorella virus vAL-1 soaked in 200mM D-glucuronic acid, 10% PEG-3350, and 200mM glycine-NaOH (pH 10.0) 2009-08-08 2009-10-20 Ogura, K.,Yamasaki, M.,Yamada, T.,Mikami, B.,Hashimoto, W.,Murata, K. Crystal structure of family 14 polysaccharide lyase with pH-dependent modes of action J.Biol.Chem. 2009 284 35572 35579 3A1I 19819352 Crystal structure of Rhodococcus sp. N-771 Amidase complexed with Benzamide 2009-04-03 2009-10-27 Ohtaki, A.,Murata, K.,Sato, Y.,Noguchi, K.,Miyatake, H.,Dohmae, N.,Yamada, K.,Yohda, M.,Odaka, M. Structure and Characterization of Amidase from Rhodococcus sp. N-771: Insight into the Molecular Mechanism of Substrate Recognition Biochim.Biophys.Acta 2009 0 0 0 3A6T 19864691 Crystal structure of MutT-8-OXO-DGMP complex 2009-09-09 2009-10-27 Nakamura, T.,Meshitsuka, S.,Kitagawa, S.,Abe, N.,Yamada, J.,Ishino, T.,Nakano, H.,Tsuzuki, T.,Doi, T.,Kobayashi, Y.,Fujii, S.,Sekiguchi, M.,Yamagata, Y. Structural and dynamic features of the MutT protein in the recognition of nucleotides with the mutagenic 8-oxoguanine base J.Biol.Chem. 2010 285 444 452 3I95 Crystal structure of E76Q mutant PcyA-biliverdin complex 2009-07-10 2009-10-27 Hagiwara, Y.,Sugishima, M.,Khawn, H.,Kinoshita, H.,Inomata, K.,Shang, L.,Lagarias, J.C.,Takahashi, Y.,Fukuyama, K. Structural insights into vinyl reduction regiospecificity of phycocyanobilin:ferredoxin oxidoreductase (PcyA). To be Published 0 0 0 0 2ZUM 19847920 Functional Analysis of Hyperthermophilic Endocellulase from the Archaeon Pyrococcus horikoshii 2008-10-21 2009-11-03 Kim, H.-W.,Ishikawa, K. Structure of hyperthermophilic endocellulase from Pyrococcus horikoshii Proteins 2009 78 496 500 2ZW5 19889644 Crystal structure of bleomycin N-acetyltransferase complexed with coenzyme A in the trigonal crystal 2008-12-01 2009-11-03 Oda, K.,Matoba, Y.,Noda, M.,Kumagai, T.,Sugiyama, M. Catalytic mechanism of bleomycin N-acetyltransferase proposed on the basis of its crystal structure. J.Biol.Chem. 2010 285 1446 1456 2ZW7 19889644 Crystal structure of bleomycin N-acetyltransferase complexed with bleomycin A2 and coenzyme A 2008-12-01 2009-11-03 Oda, K.,Matoba, Y.,Noda, M.,Kumagai, T.,Sugiyama, M. Catalytic mechanism of bleomycin N-acetyltransferase proposed on the basis of its crystal structure. J.Biol.Chem. 2010 285 1446 1456 3A2P 19889645 Structure of 6-aminohexanoate cyclic dimer hydrolase 2009-05-26 2009-11-03 Yasuhira, K.,Shibata, N.,Mongami, G.,Uedo, Y.,Atsumi, Y.,Kawashima, Y.,Hibino, A.,Tanaka, Y.,Lee, Y.-H.,Kato, D.,Takeo, M.,Higuchi, Y.,Negoro, S. X-ray crystallographic analysis of the 6-aminohexanoate cyclic dimer hydrolase: catalytic mechanism and evolution of an enzyme responsible for nylon-6 byproduct degradation J.Biol.Chem. 2010 285 1239 1248 2ZW2 Crystal Structure of Formylglycinamide Ribonucleotide Amidotransferase III from SULFOLOBUS TOKODAII (STPURS) 2008-11-27 2009-11-17 Suzuki, S.,Tamura, S.,Okada, K.,Baba, S.,Kumasaka, T.,Nakagawa, N.,Masui, R.,Kuramitsu, S.,Sampei, G.,Kawai, G. Crystal Structure of Formylglycinamide Ribonucleotide Amidotransferase III from SULFOLOBUS TOKODAII (STPURS) To be Published 0 0 0 0 3HB0 19858093 Structure of edeya2 complexed with bef3 2009-05-03 2009-12-01 Jung, S.K.,Jeong, D.G.,Chung, S.J.,Kim, J.H.,Park, B.C.,Tonks, N.K.,Ryu, S.E.,Kim, S.J. Crystal structure of ED-Eya2: insight into dual roles as a protein tyrosine phosphatase and a transcription factor Faseb J. 2010 24 560 569 3HB1 19858093 Crystal structure of ed-eya2 complexed with Alf3 2009-05-03 2009-12-01 Jung, S.K.,Jeong, D.G.,Chung, S.J.,Kim, J.H.,Park, B.C.,Tonks, N.K.,Ryu, S.E.,Kim, S.J. Crystal structure of ED-Eya2: insight into dual roles as a protein tyrosine phosphatase and a transcription factor Faseb J. 2010 24 560 569 3AAG 20007322 Crystal structure of C. jejuni pglb C-terminal domain 2009-11-16 2009-12-08 Maita, N.,Nyirenda, J.,Igura, M.,Kamishikiryo, J.,Kohda, D. Comparative structural biology of Eubacterial and Archaeal oligosaccharyltransferases. J.Biol.Chem. 2010 285 4941 4950 2ZWE Crystal structure of the copper-bound tyrosinase in complex with a caddie protein from streptomyces castaneoglobisporus obtained by soaking the deoxy-form crystal in dioxygen-saturated solution for 40 minutes 2008-12-03 2009-12-15 Matoba, Y.,Yoshitsu, H.,Jeon, H.J.,Oda, K.,Noda, M.,Kumagai, T.,Sugiyama, M. Crystallographic evidence of drastic movement of a copper ion toward the substrate tyrosine for starting hydroxylation reaction of tyrosinase To be Published 0 0 0 0 2ZWF Crystal structure of the copper-bound tyrosinase in complex with a caddie protein from streptomyces castaneoglobisporus obtained by soaking the deoxy-form crystal in dioxygen-saturated solution for 80 minutes 2008-12-03 2009-12-15 Matoba, Y.,Yoshitsu, H.,Jeon, H.J.,Oda, K.,Noda, M.,Kumagai, T.,Sugiyama, M. Crystallographic evidence of drastic movement of a copper ion toward the substrate tyrosine for starting hydroxylation reaction of tyrosinase To be Published 0 0 0 0 2ZWG Crystal structure of the copper-bound tyrosinase in complex with a caddie protein from streptomyces castaneoglobisporus obtained by soaking the deoxy-form crystal in dioxygen-saturated solution for 12 hours 2008-12-03 2009-12-15 Matoba, Y.,Yoshitsu, H.,Jeon, H.J.,Oda, K.,Noda, M.,Kumagai, T.,Sugiyama, M. Crystallographic evidence of drastic movement of a copper ion toward the substrate tyrosine for starting hydroxylation reaction of tyrosinase To be Published 0 0 0 0 3FKK Structure of L-2-keto-3-deoxyarabonate dehydratase 2008-12-17 2010-01-12 Shimada, N.,Mikami, B.,Watanabe, S.,Kodaki, T.,Makino, K. Structural analysis of L -2-keto-3-deoxyarabonate dehydratase an enzyme involved in an alternative bacterial pathway of L-arabinose metabolism in complex with pyruvate To be Published 0 0 0 0 3FKR Structure of L-2-keto-3-deoxyarabonate dehydratase complex with pyruvate 2008-12-17 2010-02-02 Shimada, N.,Mikami, B.,Watanabe, S.,Kodaki, T.,Makino, K. Structural analysis of L -2-keto-3-deoxyarabonate dehydratase an enzyme involved in an alternative bacterial pathway of L-arabinose metabolism in complex with pyruvate To be Published 0 0 0 0 3ITT 20088877 Crystal structure of Pseudomonas stutzeri L-rhamnose isomerase mutant S329K in complex with L-rhamnose 2009-08-28 2010-02-02 Yoshida, H.,Yamaji, M.,Ishii, T.,Izumori, K.,Kamitori, S. Catalytic reaction mechanism of Pseudomonas stutzeri l-rhamnose isomerase deduced from X-ray structures Febs J. 2010 277 1045 1057 3A2G 20099839 Crystal Structure of K102C-Myoglobin conjugated with Fluorescein 2009-05-20 2010-03-02 Koshiyama, T.,Kawaba, N.,Hikage, T.,Shirai, M.,Miura, Y.,Huang, C.-Y.,Tanaka, K.,Watanabe, Y.,Ueno, T. Modification of porous protein crystals in development of biohybrid materials Bioconjug.Chem. 2010 21 264 269 3A75 20088880 Crystal structure of glutamate complex of halotolerant γ-glutamyltranspeptidase from Bacillus subtilis 2009-09-14 2010-03-09 Wada, K.,Irie, M.,Suzuki, H.,Fukuyama, K. Crystal structure of the halotolerant gamma-glutamyltranspeptidase from Bacillus subtilis in complex with glutamate reveals a unique architecture of the solvent-exposed catalytic pocket Febs J. 2010 277 1000 1009 3A09 Crystal structure of Sphingomonas sp. 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Crystal structure of exotype alginate lyase Atu3025 from Agrobacterium tumefaciens J.Biol.Chem. 2010 285 24519 24528 3JUJ 20238176 The crystal structure of apo- UDP-glucose pyrophosphorylase 2009-09-15 2010-03-31 Kim, H.,Choi, J.,Kim, T.,Lokanath, N.K.,Ha, S.C.,Suh, S.W.,Hwang, H.-Y.,Kim, K.K. Structural basis for the reaction mechanism of UDP-glucose pyrophosphorylase Mol.Cells 2010 29 397 405 3JUJ 20238176 The crystal structure of apo- UDP-glucose pyrophosphorylase 2009-09-15 2010-03-31 Kim, H.,Choi, J.,Kim, T.,Lokanath, N.K.,Ha, S.C.,Suh, S.W.,Hwang, H.-Y.,Kim, K.K. Structural basis for the reaction mechanism of UDP-glucose pyrophosphorylase Mol.Cells 2010 29 397 405 3A52 20057143 Crystal structure of cold-active alkailne phosphatase from psychrophile Shewanella sp. 2009-07-24 2010-04-14 Tsuruta, H.,Mikami, B.,Higashi, T.,Aizono, Y. Crystal structure of cold-active alkaline phosphatase from the psychrophile Shewanella sp. Biosci.Biotechnol.Biochem. 2010 74 69 74 3L6N 20305272 Crystal structure of metallo-beta-lactamase IND-7 2009-12-23 2010-04-14 Yamaguchi, Y.,Takashio, N.,Wachino, J.-I.,Yamagata, Y.,Arakawa, Y.,Matsuda, K.,Kurosaki, H. Structure of metallo-beta-lactamase IND-7 from a Chryseobacterium indologenes clinical isolate at 1.65-A resolution J.Biochem. 2010 147 905 915 3A1M 20661999 A fusion protein of a beta helix region of gene product 5 and the foldon region of bacteriophage T4 2009-04-11 2010-04-21 Yokoi, N.,Inaba, H.,Terauchi, M.,Stieg, A.Z.,Sanghamitra, N.J.,Koshiyama, T.,Yutani, K.,Kanamaru, S.,Arisaka, F.,Hikage, T.,Suzuki, A.,Yamane, T.,Gimzewski, J.K.,Watanabe, Y.,Kitagawa, S.,Ueno, T. Construction of Robust Bio-nanotubes using the Controlled Self-Assembly of Component Proteins of Bacteriophage T4 Small 2010 6 1873 1879 3IWR 20544965 Crystal structure of class I chitinase from Oryza sativa L. japonica 2009-09-03 2010-04-21 Kezuka, Y.,Kojima, M.,Mizuno, R.,Suzuki, K.,Watanabe, T.,Nonaka, T. Structure of full-length class I chitinase from rice revealed by X-ray crystallography and small-angle X-ray scattering. Proteins 2010 78 2295 2305 3KGL 20215054 Crystal structure of procruciferin, 11S globulin from Brassica napus 2009-10-29 2010-04-21 Tandang-Silvas, M.R.,Fukuda, T.,Fukuda, C.,Prak, K.,Cabanos, C.,Kimura, A.,Itoh, T.,Mikami, B.,Utsumi, S.,Maruyama, N. Conservation and divergence on plant seed 11S globulins based on crystal structures. Biochim.Biophys.Acta 2010 1804 1432 1442 3KSC 20215054 Crystal structure of pea prolegumin, an 11S seed globulin from Pisum sativum L. 2009-11-21 2010-04-21 Tandang-Silvas, M.R.,Fukuda, T.,Fukuda, C.,Prak, K.,Cabanos, C.,Kimura, A.,Itoh, T.,Mikami, B.,Utsumi, S.,Maruyama, N. Conservation and divergence on plant seed 11S globulins based on crystal structures. Biochim.Biophys.Acta 2010 1804 1432 1442 3AFL 20507980 Crystal structure of exotype alginate lyase Atu3025 H531A complexed with alginate trisaccharide 2010-03-09 2010-04-28 Ochiai, A.,Yamasaki, M.,Mikami, B.,Hashimoto, W.,Murata, K. Crystal structure of exotype alginate lyase Atu3025 from Agrobacterium tumefaciens J.Biol.Chem. 2010 285 24519 24528 3AEI 20434454 Crystal structure of the prefoldin beta2 subunit from Thermococcus strain KS-1 2010-02-08 2010-05-19 Sahlan, M.,Zako, T.,Tai, P.T.,Ohtaki, A.,Noguchi, K.,Maeda, M.,Miyatake, H.,Dohmae, N.,Yohda, M. Thermodynamic Characterization of the Interaction between Prefoldin and Group II Chaperonin J.Mol.Biol. 2010 399 628 636 3I9T 20380462 Crystal structure of the rat heme oxygenase (HO-1) in complex with heme binding dithiothreitol (DTT) 2009-07-13 2010-05-19 Matsui, T.,Iwasaki, M.,Sugiyama, R.,Unno, M.,Ikeda-Saito, M. Dioxygen activation for the self-degradation of heme: reaction mechanism and regulation of heme oxygenase. Inorg.Chem. 2010 49 3602 3609 3A70 20438738 Crystal structure of Pseudomonas sp. MIS38 lipase in complex with diethyl phosphate 2009-09-10 2010-05-26 Angkawidjaja, C.,Matsumura, H.,Koga, Y.,Takano, K.,Kanaya, S. X-ray Crystallographic and MD Simulation Studies on the Mechanism of Interfacial Activation of a Family I.3 Lipase with Two Lids J.Mol.Biol. 2010 0 0 0 3ABO 20519496 Crystal structure of ethanolamine ammonia-lyase from Escherichia coli complexed with CN-Cbl and ethanolamine 2009-12-21 2010-06-02 Shibata, N.,Tamagaki, H.,Hieda, N.,Akita, K.,Komori, H.,Shomura, Y.,Terawaki, S.,Mori, K.,Yasuoka, N.,Higuchi, Y.,Toraya, T. Crystal structures of ethanolamine ammonia-lyase complexed with coenzyme B12 analogs and substrates. J.Biol.Chem. 2010 285 26484 26493 3ABQ 20519496 Crystal structure of ethanolamine ammonia-lyase from Escherichia coli complexed with CN-Cbl and 2-amino-1-propanol 2009-12-21 2010-06-02 Shibata, N.,Tamagaki, H.,Hieda, N.,Akita, K.,Komori, H.,Shomura, Y.,Terawaki, S.,Mori, K.,Yasuoka, N.,Higuchi, Y.,Toraya, T. Crystal structures of ethanolamine ammonia-lyase complexed with coenzyme B12 analogs and substrates. J.Biol.Chem. 2010 285 26484 26493 3KKM 20479006 Crystal structure of H-Ras T35S in complex with GppNHp 2009-11-06 2010-06-16 Shima, F.,Ijiri, Y.,Muraoka, S.,Liao, J.,Ye, M.,Araki, M.,Matsumoto, K.,Yamamoto, N.,Sugimoto, T.,Yoshikawa, Y.,Kumasaka, T.,Yamamoto, M.,Tamura, A.,Kataoka, T. Structural basis for conformational dynamics of GTP-bound Ras protein J.Biol.Chem. 2010 285 22696 22705 3KKN 20479006 Crystal structure of H-Ras T35S in complex with GppNHp 2009-11-06 2010-06-16 Shima, F.,Ijiri, Y.,Muraoka, S.,Liao, J.,Ye, M.,Araki, M.,Matsumoto, K.,Yamamoto, N.,Sugimoto, T.,Yoshikawa, Y.,Kumasaka, T.,Yamamoto, M.,Tamura, A.,Kataoka, T. Structural basis for conformational dynamics of GTP-bound Ras protein J.Biol.Chem. 2010 285 22696 22705 3KKO 20479006 Crystal structure of M-Ras P40D/D41E/L51R in complex with GppNHp 2009-11-06 2010-06-16 Shima, F.,Ijiri, Y.,Muraoka, S.,Liao, J.,Ye, M.,Araki, M.,Matsumoto, K.,Yamamoto, N.,Sugimoto, T.,Yoshikawa, Y.,Kumasaka, T.,Yamamoto, M.,Tamura, A.,Kataoka, T. Structural basis for conformational dynamics of GTP-bound Ras protein J.Biol.Chem. 2010 285 22696 22705 3HSB 22053080 Crystal structure of YmaH (Hfq) from Bacillus subtilis in complex with an RNA aptamer 2009-06-10 2010-06-23 Someya, T.,Baba, S.,Fujimoto, M.,Kawai, G.,Kumasaka, T.,Nakamura, K. Crystal structure of Hfq from Bacillus subtilis in complex with SELEX-derived RNA aptamer: insight into RNA-binding properties of bacterial Hfq Nucleic Acids Res. 2012 40 1856 1867 3K3T 20586063 E185A mutant of peptidoglycan hydrolase from Sphingomonas sp. A1 2009-10-04 2010-07-14 Maruyama, Y.,Ochiai, A.,Itoh, T.,Mikami, B.,Hashimoto, W.,Murata, K. Mutational studies of the peptidoglycan hydrolase FlgJ of Sphingomonas sp. strain A1 J.Basic Microbiol. 2010 50 311 317 3INV Trypanosoma cruzi Dihydrofolate Reductase-Thymidylate Synthase COMPLEXED WITH NADPH, dUMP AND C-448 ANTIFOLATE 2009-08-13 2010-07-28 Chitnumsub, P.,Yuvaniyama, J.,Vilaivan, T.,Vanichtanankul, J.,Kamchonwongpaisan, S.,Yuthavong, Y. Structural basis of antifolate inhibition of Trypanosoma cruzi Dihydrofolate Reductase-Thymidylate Synthase To be Published 0 0 0 0 3IRM Trypanosoma cruzi Dihydrofolate Reductase-Thymidylate Synthase COMPLEXED WITH Cycloguanil 2009-08-24 2010-07-28 Chitnumsub, P.,Yuvaniyama, J.,Vilaivan, T.,Vanichtanankul, J.,Kamchonwongpaisan, S.,Yuthavong, Y. Structural basis of antifolate inhibition of Trypanosoma cruzi Dihydrofolate Reductase-Thymidylate Synthase To be Published 0 0 0 0 3A54 21926168 Crystal structure of the A47Q1 mutant of pro-protein-glutaminase 2009-07-30 2010-08-11 Hashizume, R.,Maki, Y.,Mizutani, K.,Takahashi, N.,Matsubara, H.,Sugita, A.,Sato, K.,Yamaguchi, S.,Mikami, B. Crystal structures of protein glutaminase and its pro forms converted into enzyme-substrate complex J.Biol.Chem. 2011 286 38691 38702 3A55 21926168 Crystal structure of the A47Q2 mutant of pro- protein-glutaminase 2009-07-30 2010-08-11 Hashizume, R.,Maki, Y.,Mizutani, K.,Takahashi, N.,Matsubara, H.,Sugita, A.,Sato, K.,Yamaguchi, S.,Mikami, B. Crystal structures of protein glutaminase and its pro forms converted into enzyme-substrate complex J.Biol.Chem. 2011 286 38691 38702 3A56 21926168 Crystal structure of pro- protein-glutaminase 2009-07-31 2010-08-11 Hashizume, R.,Maki, Y.,Mizutani, K.,Takahashi, N.,Matsubara, H.,Sugita, A.,Sato, K.,Yamaguchi, S.,Mikami, B. Crystal structures of protein glutaminase and its pro forms converted into enzyme-substrate complex J.Biol.Chem. 2011 286 38691 38702 3AF8 20586408 Crystal Structure of Pd(ally)/apo-C126AFr 2010-02-24 2010-08-11 Abe, S.,Hikage, T.,Watanabe, Y.,Kitagawa, S.,Ueno, T. Mechanism of Accumulation and Incorporation of Organometallic Pd Complexes into the Protein Nanocage of apo-Ferritin. Inorg.Chem. 2010 49 6967 6973 3AFM 20685299 Crystal structure of aldose reductase A1-R responsible for alginate metabolism 2010-03-10 2010-08-11 Takase, R.,Ochiai, A.,Mikami, B.,Hashimoto, W.,Murata, K. Molecular identification of unsaturated uronate reductase prerequisite for alginate metabolism in Sphingomonas sp. A1 Biochim.Biophys.Acta 2010 1804 1925 1936 3AFN 20685299 Crystal structure of aldose reductase A1-R complexed with NADP 2010-03-10 2010-08-11 Takase, R.,Ochiai, A.,Mikami, B.,Hashimoto, W.,Murata, K. Molecular identification of unsaturated uronate reductase prerequisite for alginate metabolism in Sphingomonas sp. A1 Biochim.Biophys.Acta 2010 1804 1925 1936 3ABG 20606269 X-ray Crystal Analysis of Bilirubin Oxidase from Myrothecium verrucaria at 2.3 angstrom Resolution using a Twin Crystal 2009-12-10 2010-08-18 Mizutani, K.,Toyoda, M.,Sagara, K.,Takahashi, N.,Sato, A.,Kamitaka, Y.,Tsujimura, S.,Nakanishi, Y.,Sugiura, T.,Yamaguchi, S.,Kano, K.,Mikami, B. X-ray analysis of bilirubin oxidase from Myrothecium verrucaria at 2.3 A resolution using a twinned crystal Acta Crystallogr.,Sect.F 2010 66 765 770 3AJP 20705053 Crystal structure of human H ferritin E140A mutant 2010-06-11 2010-08-25 Masuda, T.,Goto, F.,Yoshihara, T.,Mikami, B. The universal mechanism for iron translocation to the ferroxidase site in ferritin, which is mediated by the well conserved transit site Biochem.Biophys.Res.Commun. 2010 400 94 99 3AJQ 20705053 Crystal structure of human H ferritin E140Q mutant 2010-06-11 2010-08-25 Masuda, T.,Goto, F.,Yoshihara, T.,Mikami, B. The universal mechanism for iron translocation to the ferroxidase site in ferritin, which is mediated by the well conserved transit site Biochem.Biophys.Res.Commun. 2010 400 94 99 3AGC 20727901 F218V mutant of the substrate-bound red chlorophyll catabolite reductase from Arabidopsis thaliana 2010-03-30 2010-09-01 Sugishima, M.,Okamoto, Y.,Noguchi, M.,Kohchi, T.,Tamiaki, H.,Fukuyama, K. Crystal structures of the substrate-bound forms of red chlorophyll catabolite reductase: implications for site-specific and stereospecific reaction J.Mol.Biol. 2010 402 879 891 3A74 Lysyl-tRNA synthetase from Bacillus stearothermophilus complexed with Diadenosine Tetraphosphate (AP4A) 2009-09-13 2010-09-22 Sakurama, H.,Takita, T.,Mikami, B.,Itoh, T.,Yasukawa, K.,Inouye, K. Crystal Structure of Lysyl-tRNA Synthetase from Bacillus stearothermophilus in Complex with Diadenosine Tetraphosphate (AP4A): Insights into AP4A Synthesis Mechanisms and Implication for Recognition of Discriminator Base of tRNA^Lys To be Published 0 0 0 0 3AJ1 20921370 The structure of AxCeSD octamer (N-terminal HIS-tag) from Acetobacter xylinum 2010-05-20 2010-10-06 Hu, S.Q.,Gao, Y.G.,Tajima, K.,Sunagawa, N.,Zhou, Y.,Kawano, S.,Fujiwara, T.,Yoda, T.,Shimura, D.,Satoh, Y.,Munekata, M.,Tanaka, I.,Yao, M. Structure of bacterial cellulose synthase subunit D octamer with four inner passageways Proc.Natl.Acad.Sci.USA 2010 107 17957 17961 3ANI 21147778 Crystal structure of unsaturated glucuronyl hydrolase mutant D175N from Streptcoccus agalactiae 2010-09-02 2010-10-06 Nakamichi, Y.,Maruyama, Y.,Mikami, B.,Hashimoto, W.,Murata, K. Structural determinants in streptococcal unsaturated glucuronyl hydrolase for recognition of glycosaminoglycan sulfate groups J.Biol.Chem. 2011 286 6262 6271 3ANJ 21147778 Crystal structure of unsaturated glucuronyl hydrolase from Streptcoccus agalactiae 2010-09-02 2010-10-06 Nakamichi, Y.,Maruyama, Y.,Mikami, B.,Hashimoto, W.,Murata, K. Structural determinants in streptococcal unsaturated glucuronyl hydrolase for recognition of glycosaminoglycan sulfate groups J.Biol.Chem. 2011 286 6262 6271 3ANK 21147778 Crystal structure of unsaturated glucuronyl hydrolase mutant D175N from Streptcoccus agalactiae complexed with dGlcA-GalNAc6S 2010-09-02 2010-10-06 Nakamichi, Y.,Maruyama, Y.,Mikami, B.,Hashimoto, W.,Murata, K. Structural determinants in streptococcal unsaturated glucuronyl hydrolase for recognition of glycosaminoglycan sulfate groups J.Biol.Chem. 2011 286 6262 6271 3K8V Crysatl structure of a bacterial cell-surface flagellin N20C20 2009-10-15 2010-10-06 Maruyama, Y.,Momma, M.,Mikami, B.,Hashimoto, W.,Murata, K. Crystal structure of N- and C-terminal regions of flagellin To be Published 0 0 0 0 3K8W Crysatl structure of a bacterial cell-surface flagellin N20C45 2009-10-15 2010-10-06 Maruyama, Y.,Momma, M.,Mikami, B.,Hashimoto, W.,Murata, K. Crystal structure of N- and C-terminal regions of flagellin To be Published 0 0 0 0 3AAB 21195185 Small heat shock protein hsp14.0 with the mutations of I120F and I122F in the form I crystal 2009-11-13 2010-11-17 Takeda, K.,Hayashi, T.,Abe, T.,Hirano, Y.,Hanazono, Y.,Yohda, M.,Miki, K. Dimer structure and conformational variability in the N-terminal region of an archaeal small heat shock protein, StHsp14.0 J.Struct.Biol. 2011 174 92 99 3AAC 21195185 Small heat shock protein hsp14.0 with the mutations of I120F and I122F in the form II crystal 2009-11-13 2010-11-17 Takeda, K.,Hayashi, T.,Abe, T.,Hirano, Y.,Hanazono, Y.,Yohda, M.,Miki, K. Dimer structure and conformational variability in the N-terminal region of an archaeal small heat shock protein, StHsp14.0 J.Struct.Biol. 2011 174 92 99 3LZW 20878669 Crystal structure of ferredoxin-NADP+ oxidoreductase from bacillus subtilis (form I) 2010-03-02 2010-12-08 Komori, H.,Seo, D.,Sakurai, T.,Higuchi, Y. Crystal structure analysis of Bacillus subtilis ferredoxin-NADP(+) oxidoreductase and the structural basis for its substrate selectivity Protein Sci. 2010 19 2279 2290 3LZX 20878669 Crystal structure of ferredoxin-NADP+ oxidoreductase from Bacillus subtilis (FORM II) 2010-03-02 2010-12-08 Komori, H.,Seo, D.,Sakurai, T.,Higuchi, Y. Crystal structure analysis of Bacillus subtilis ferredoxin-NADP(+) oxidoreductase and the structural basis for its substrate selectivity Protein Sci. 2010 19 2279 2290 3ADS 20717101 Human PPARgamma ligand-binding domain in complex with indomethacin 2010-01-29 2010-12-22 Waku, T.,Shiraki, T.,Oyama, T.,Maebara, K.,Nakamori, R.,Morikawa, K. The nuclear receptor PPARgamma individually responds to serotonin- and fatty acid-metabolites Embo J. 2010 29 3395 3407 3ADT 20717101 Human PPARgamma ligand-binding domain in complex with 5-hydroxy-indole acetate 2010-01-29 2010-12-22 Waku, T.,Shiraki, T.,Oyama, T.,Maebara, K.,Nakamori, R.,Morikawa, K. The nuclear receptor PPARgamma individually responds to serotonin- and fatty acid-metabolites Embo J. 2010 29 3395 3407 3ADU 20717101 Human PPARgamma ligand-binding domain in complex with 5-methoxy-indole acetate 2010-01-29 2010-12-22 Waku, T.,Shiraki, T.,Oyama, T.,Maebara, K.,Nakamori, R.,Morikawa, K. The nuclear receptor PPARgamma individually responds to serotonin- and fatty acid-metabolites Embo J. 2010 29 3395 3407 3ADV 20717101 Human PPARgamma ligand-binding domain in complex with serotonin 2010-01-29 2010-12-22 Waku, T.,Shiraki, T.,Oyama, T.,Maebara, K.,Nakamori, R.,Morikawa, K. The nuclear receptor PPARgamma individually responds to serotonin- and fatty acid-metabolites Embo J. 2010 29 3395 3407 3ADW 20717101 Human PPARgamma ligand-binding domain in complex with 5-methoxy-indole acetate and 15-oxo-eicosatetraenoic acid 2010-01-29 2010-12-22 Waku, T.,Shiraki, T.,Oyama, T.,Maebara, K.,Nakamori, R.,Morikawa, K. The nuclear receptor PPARgamma individually responds to serotonin- and fatty acid-metabolites Embo J. 2010 29 3395 3407 3ADX 20717101 Human PPARgamma ligand-binding domain in complex with indomethacin and nitro-233 2010-01-29 2010-12-22 Waku, T.,Shiraki, T.,Oyama, T.,Maebara, K.,Nakamori, R.,Morikawa, K. The nuclear receptor PPARgamma individually responds to serotonin- and fatty acid-metabolites Embo J. 2010 29 3395 3407 3AJB 21102411 Crystal Structure of human Pex3p in complex with N-terminal Pex19p peptide 2010-05-27 2010-12-22 Sato, Y.,Shibata, H.,Nakatsu, T.,Nakano, H.,Kashiwayama, Y.,Imanaka, T.,Kato, H. Structural basis for docking of peroxisomal membrane protein carrier Pex19p onto its receptor Pex3p Embo J. 2010 29 4083 4093 3NOZ 20730233 Crystal Structure of Pd(allyl)/apo-E45C/R52H-rHLFr 2010-06-27 2010-12-22 Wang, Z.,Takezawa, Y.,Aoyagi, H.,Abe, S.,Hikage, T.,Watanabe, Y.,Kitagawa, S.,Ueno, T. Definite coordination arrangement of organometallic palladium complexes accumulated on the designed interior surface of apo-ferritin. Chem.Commun.(Camb.) 2011 47 170 172 3NP0 20730233 Crystal Structure of Pd(allyl)/apo-E45C/H49A/R52H-rHLFr 2010-06-27 2010-12-22 Wang, Z.,Takezawa, Y.,Aoyagi, H.,Abe, S.,Hikage, T.,Watanabe, Y.,Kitagawa, S.,Ueno, T. Definite coordination arrangement of organometallic palladium complexes accumulated on the designed interior surface of apo-ferritin. Chem.Commun.(Camb.) 2011 47 170 172 3NP2 20730233 Crystal Structure of Pd(allyl)/apo-E45C/C48A-rHLFr 2010-06-27 2010-12-22 Wang, Z.,Takezawa, Y.,Aoyagi, H.,Abe, S.,Hikage, T.,Watanabe, Y.,Kitagawa, S.,Ueno, T. Definite coordination arrangement of organometallic palladium complexes accumulated on the designed interior surface of apo-ferritin. Chem.Commun.(Camb.) 2011 47 170 172 3AHP 21169681 Crystal structure of stable protein, CutA1, from a psychrotrophic bacterium Shewanella sp. SIB1 2010-04-26 2011-01-05 Sato, A.,Yokotani, S.,Tadokoro, T.,Tanaka, S.I.,Angkawidjaja, C.,Koga, Y.,Takano, K.,Kanaya, S. Crystal structure of stable protein CutA1 from psychrotrophic bacterium Shewanella sp. SIB1 J.SYNCHROTRON RADIAT. 2011 18 6 10 3AP4 21288902 Crystal structure of the galectin-8 N-terminal carbohydrate recognition domain in complex with lactose 2010-10-11 2011-01-26 Ideo, H.,Matsuzaka, T.,Nonaka, T.,Seko, A.,Yamashita, K. Galectin-8-N-domain recognition mechanism for sialylated and sulfated glycans J.Biol.Chem. 2011 286 11346 11355 3APB Crystal structure of the galectin-8 N-terminal carbohydrate recognition domain in complex with iodide 2010-10-14 2011-01-26 Ideo, H.,Matsuzaka, T.,Nonaka, T.,Seko, A.,Yamashita, K. Galectin-8-N-domain recognition mechanism for sialylated and sulfated glycans To be Published 0 0 0 0 3ABW Crystal structure of pharaonis halorhodopsin in complex with azide ion 2009-12-24 2011-02-02 Kanada, S.,Kouyama, T. Binding mode of azide ion to pharaonis halorhodopsin To be Published 0 0 0 0 3AMI 21262231 The crystal structure of the M16B metallopeptidase subunit from Sphingomonas sp. A1 2010-08-20 2011-02-02 Maruyama, Y.,Chuma, A.,Mikami, B.,Hashimoto, W.,Murata, K. Heterosubunit composition and crystal structures of a novel bacterial M16B metallopeptidase J.Mol.Biol. 2011 407 180 192 3AMJ 21262231 The crystal structure of the heterodimer of M16B peptidase from Sphingomonas sp. A1 2010-08-20 2011-02-09 Maruyama, Y.,Chuma, A.,Mikami, B.,Hashimoto, W.,Murata, K. Heterosubunit composition and crystal structures of a novel bacterial M16B metallopeptidase J.Mol.Biol. 2011 407 180 192 3AT7 21238429 Crystal structure of bacterial cell-surface alginate-binding protein Algp7 2010-12-27 2011-02-23 Maruyama, Y.,Ochiai, A.,Mikami, B.,Hashimoto, W.,Murata, K. Crystal structure of bacterial cell-surface alginate-binding protein with an M75 peptidase motif. Biochem.Biophys.Res.Commun. 2011 405 411 416 3PIR Crystal structure of M-RasD41E in complex with GppNHp (type 1) 2010-11-07 2011-03-09 Muraoka, S.,Matsumoto, K.,Shima, F.,Hu, L.,Ijiri, Y.,Hirai, R.,Liao, J.,Kataoka, T. Crystal structure of M-RasD41E in complex with GppNHp (type 1) To be Published 0 0 0 0 3PIT Crystal structure of M-RasD41E in complex with GppNHp (type 2) 2010-11-08 2011-03-09 Muraoka, S.,Matsumoto, K.,Shima, F.,Hu, L.,Ijiri, Y.,Hirai, R.,Liao, J.,Kataoka, T. Crystal structure of M-RasD41E in complex with GppNHp (type 2) To be Published 0 0 0 0 3AFO Crystal Structure of Yeast NADH Kinase complexed with NADH 2010-03-10 2011-03-16 Ando, T.,Ohashi, K.,Ochiai, A.,Miyagi, H.,Kawai, S.,Mikami, B.,Murata, K. The structural factor conferring NADH kinase activity on yeast mitochondrial Pos5 To be Published 0 0 0 0 3AGI 21084280 High resolution X-ray analysis of Arg-lysozyme complex in the presence of 500 mM Arg 2010-03-31 2011-03-23 Ito, L.,Shiraki, K.,Matsuura, T.,Okumura, M.,Hasegawa, K.,Baba, S.,Yamaguchi, H.,Kumasaka, T. High-resolution X-ray analysis reveals binding of arginine to aromatic residues of lysozyme surface: implication of suppression of protein aggregation by arginine Protein Eng.Des.Sel. 2011 24 269 274 3NUG 21307574 Crystal structure of wild type tetrameric pyridoxal 4-dehydrogenase from Mesorhizobium loti 2010-07-06 2011-04-20 Chu, H.N.,Kobayashi, J.,Mikami, B.,Yagi, T. The crystal structure of SDR-type pyridoxal 4-dehydrogenase of Mesorhizobium loti Biosci.Biotechnol.Biochem. 2011 75 388 390 3O7R 21113534 Crystal structure of Ru(p-cymene)/apo-H49AFr 2010-07-31 2011-04-20 Takezawa, Y.,Bockmann, P.,Sugi, N.,Wang, Z.,Abe, S.,Murakami, T.,Hikage, T.,Erker, G.,Watanabe, Y.,Kitagawa, S.,Ueno, T. Incorporation of organometallic Ru complexes into apo-ferritin cage. J.CHEM.SOC.,DALTON TRANS. 2011 40 2190 2195 3O7S 21113534 Crystal structure of Ru(p-cymene)/apo-Fr 2010-07-31 2011-04-20 Takezawa, Y.,Bockmann, P.,Sugi, N.,Wang, Z.,Abe, S.,Murakami, T.,Hikage, T.,Erker, G.,Watanabe, Y.,Kitagawa, S.,Ueno, T. Incorporation of organometallic Ru complexes into apo-ferritin cage. J.Chem.Soc.,Dalton Trans. 2011 40 2190 2195 3AJY 21565705 Crystal Structure of Ancestral Congerin Con-anc 2010-06-29 2011-05-18 Konno, A.,Kitagawa, A.,Watanabe, M.,Ogawa, T.,Shirai, T. Tracing protein evolution through ancestral structures of fish galectin Structure 2011 19 711 721 3AJZ 21565705 Crystal Structure of Ancestral Congerin Con-anc 2010-06-29 2011-05-18 Konno, A.,Kitagawa, A.,Watanabe, M.,Ogawa, T.,Shirai, T. Tracing protein evolution through ancestral structures of fish galectin Structure 2011 19 711 721 3AK0 21565705 Crystal Structure of Ancestral Congerin Con-anc'-N28K 2010-06-29 2011-05-18 Konno, A.,Kitagawa, A.,Watanabe, M.,Ogawa, T.,Shirai, T. Tracing protein evolution through ancestral structures of fish galectin Structure 2011 19 711 721 3AJ3 24699732 Crystal structure of selenomethionine substituted 4-pyridoxolactonase from Mesorhizobium loti 2010-05-21 2011-05-25 Kobayashi, J.,Yoshikane, Y.,Yagi, T.,Baba, S.,Mizutani, K.,Takahashi, N.,Mikami, B. Structure of 4-pyridoxolactonase from Mesorhizobium loti. Acta Crystallogr.,Sect.F 2014 70 424 432 3AIL 22748144 Crystal structure of a HSL-like carboxylesterase from Sulfolobus tokodaii complexed with paraoxon 2010-05-16 2011-06-08 Angkawidjaja, C.,Koga, Y.,Takano, K.,Kanaya, S. Structure and stability of a thermostable carboxylesterase from the thermoacidophilic archaeon Sulfolobustokodaii Febs J. 2012 279 3071 3084 3AIM 22748144 R267E mutant of a HSL-like carboxylesterase from Sulfolobus tokodaii 2010-05-16 2011-06-08 Angkawidjaja, C.,Koga, Y.,Takano, K.,Kanaya, S. Structure and stability of a thermostable carboxylesterase from the thermoacidophilic archaeon Sulfolobustokodaii Febs J. 2012 279 3071 3084 3AIN 22748144 R267G mutant of a HSL-like carboxylesterase from Sulfolobus tokodaii 2010-05-16 2011-06-08 Angkawidjaja, C.,Koga, Y.,Takano, K.,Kanaya, S. Structure and stability of a thermostable carboxylesterase from the thermoacidophilic archaeon Sulfolobustokodaii Febs J. 2012 279 3071 3084 3AIO 22748144 R267K mutant of a HSL-like carboxylesterase from Sulfolobus tokodaii 2010-05-16 2011-06-08 Angkawidjaja, C.,Koga, Y.,Takano, K.,Kanaya, S. Structure and stability of a thermostable carboxylesterase from the thermoacidophilic archaeon Sulfolobustokodaii Febs J. 2012 279 3071 3084 3AL7 21636903 Recombinant thaumatin I at 1.1 A 2010-07-27 2011-06-08 Masuda, T.,Ohta, K.,Mikami, B.,Kitabatake, N. High-resolution structure of the recombinant sweet-tasting protein thaumatin I Acta Crystallogr.,Sect.F 2011 67 652 658 3ALD 21636903 Crystal structure of sweet-tasting protein Thaumatin I at 1.10 A 2010-07-29 2011-06-08 Masuda, T.,Ohta, K.,Mikami, B.,Kitabatake, N. High-resolution structure of the recombinant sweet-tasting protein thaumatin I Acta Crystallogr.,Sect.F 2011 67 652 658 3ASM 21664908 Crystal structure of Q54A mutant protein of Bst-RNase HIII 2010-12-16 2011-06-08 Miyashita, S.,Tadokoro, T.,Angkawidjaja, C.,You, D.-J.,Koga, Y.,Takano, K.,Kanaya, S. Identification of the substrate binding site in the N-terminal TBP-like domain of RNase H3. Febs Lett. 2011 585 2313 2317 3NDR Crystal structure of tetrameric pyridoxal 4-dehydrogenase from Mesorhizobium loti 2010-06-08 2011-06-08 Chu, H.N.,Kobayashi, J.,Yoshikane, Y.,Mikami, B.,Yagi, T. Crystal structure of tetrameric pyridoxal 4-dehydrogenase from Mesorhizobium loti To be Published 0 0 0 0 3ALY 21283826 Crystal Structure of RNase HI from Sulfolobus tokodaii with C-terminal deletion 2010-08-10 2011-06-22 Takano, K.,Okamoto, T.,Okada, J.,Tanaka, S.,Angkawidjaja, C.,Koga, Y.,Kanaya, S. Stabilization by fusion to the C-terminus of hyperthermophile Sulfolobus tokodaii RNase HI: a possibility of protein stabilization tag Plos One 2011 6 0 0 3AWV 21730070 Crystal structure of Streptomyces tyrosinase in a complex with caddie soaked in a Cu(II)-containing solution for 80 hr: occupancy of CuA is low 2011-03-26 2011-06-29 Matoba, Y.,Bando, N.,Oda, K.,Noda, M.,Higashikawa, F.,Kumagai, T.,Sugiyama, M. A molecular mechanism for copper transportation to tyrosinase that is assisted by a metallochaperone, caddie protein J.Biol.Chem. 2011 286 30219 30231 3AWR 21591667 Crystal structure of Rat TOM20-ALDH presequence complex: The intermolecular disulfide bond was cleaved in the crystal of a disulfide-tethered complex. 2011-03-26 2011-07-06 Saitoh, T.,Igura, M.,Miyazaki, Y.,Ose, T.,Maita, N.,Kohda, D. Crystallographic snapshots of tom20-mitochondrial presequence interactions with disulfide-stabilized peptides. Biochemistry 2011 50 5487 5496 3AHU Crystal structure of YmaH (Hfq) from Bacillus subtilis in complex with an RNA aptamer. 2010-04-29 2011-07-13 Someya, T.,Baba, S.,Fujimoto, M.,Kumasaka, T.,Kawai, G.,Nakamura, K. Crystal structure of YmaH (Hfq) from Bacillus subtilis in complex with an RNA aptamer. To be Published 0 0 0 0 3AN3 21128600 Human PPAR gamma ligand binding domain in complex with a gamma selective agonist MO3S 2010-08-30 2011-07-27 Ohashi, M.,Oyama, T.,Nakagome, I.,Satoh, M.,Nishio, Y.,Nobusada, H.,Hirono, S.,Morikawa, K.,Hashimoto, Y.,Miyachi, H. Design, Synthesis, and Structural Analysis of Phenylpropanoic Acid-Type PPAR gamma-Selective Agonists: Discovery of Reversed Stereochemistry-Activity Relationship J.Med.Chem. 2011 54 331 341 3AN4 21128600 Human PPAR gamma ligand binding domain in complex with a gamma selective agonist MO4R 2010-08-30 2011-07-27 Ohashi, M.,Oyama, T.,Nakagome, I.,Satoh, M.,Nishio, Y.,Nobusada, H.,Hirono, S.,Morikawa, K.,Hashimoto, Y.,Miyachi, H. Design, Synthesis, and Structural Analysis of Phenylpropanoic Acid-Type PPAR gamma-Selective Agonists: Discovery of Reversed Stereochemistry-Activity Relationship J.Med.Chem. 2011 54 331 341 3ANW 21527023 A protein complex essential initiation of DNA replication 2010-09-10 2011-07-27 Oyama, T.,Ishino, S.,Fujino, S.,Ogino, H.,Shirai, T.,Mayanagi, K.,Saito, M.,Nagasawa, N.,Ishino, Y.,Morikawa, K. Architectures of archaeal GINS complexes, essential DNA replication initiation factors Bmc Biol. 2011 9 28 28 3AZP 21905123 Crystal structure of puromycin hydrolase S511A mutant 2011-05-27 2011-07-27 Matoba, Y.,Nakayama, A.,Oda, K.,Noda, M.,Kumagai, T.,Nishimura, M.,Sugiyama, M. Structural evidence that puromycin hydrolase is a new type of aminopeptidase with a prolyl oligopeptidase family fold Proteins 2011 79 2999 3005 3AZQ 21905123 Crystal structure of puromycin hydrolase S511A mutant complexed with PGG 2011-05-27 2011-07-27 Matoba, Y.,Nakayama, A.,Oda, K.,Noda, M.,Kumagai, T.,Nishimura, M.,Sugiyama, M. Structural evidence that puromycin hydrolase is a new type of aminopeptidase with a prolyl oligopeptidase family fold Proteins 2011 79 2999 3005 3P1Z 21846775 Crystal structure of the Aperopyrum pernix RNA splicing endonuclease 2010-10-01 2011-08-10 Hirata, A.,Kitajima, T.,Hori, H. Cleavage of intron from the standard or non-standard position of the precursor tRNA by the splicing endonuclease of Aeropyrum pernix, a hyper-thermophilic Crenarchaeon, involves a novel RNA recognition site in the Crenarchaea specific loop Nucleic Acids Res. 2011 39 9376 9389 3SIR 21811237 Crystal Structure of drICE 2011-06-20 2011-08-10 Li, X.,Wang, J.,Shi, Y. Structural mechanisms of DIAP1 auto-inhibition and DIAP1-mediated inhibition of drICE. Nat Commun 2011 2 408 408 3QBI 21871461 Crystal structure of an anion-free yellow form of pharaonis halorhodopsin 2011-01-13 2011-08-31 Kanada, S.,Takeguchi, Y.,Murakami, M.,Ihara, K.,Kouyama, T. Crystal structures of an O-like blue form and an anion-free yellow form of pharaonis halorhodopsin J.Mol.Biol. 2011 413 162 176 3AY8 21756974 Glutathione S-transferase unclassified 2 from Bombyx mori 2011-05-02 2011-09-07 Kakuta, Y.,Usuda, K.,Nakashima, T.,Kimura, M.,Aso, Y.,Yamamoto, K. Crystallographic survey of active sites of an unclassified glutathione transferase from Bombyx mori Biochim.Biophys.Acta 2011 1810 1355 1360 3AMK 21493662 Structure of the Starch Branching Enzyme I (BEI) from Oryza sativa L 2010-08-20 2011-09-28 Noguchi, J.,Chaen, K.,Vu, N.T.,Akasaka, T.,Shimada, H.,Nakashima, T.,Nishi, A.,Satoh, H.,Omori, T.,Kakuta, Y.,Kimura, M. Crystal structure of the branching enzyme I (BEI) from Oryza sativa L with implications for catalysis and substrate binding. Glycobiology 2011 21 1108 1116 3AML 21493662 Structure of the Starch Branching Enzyme I (BEI) from Oryza sativa L 2010-08-20 2011-09-28 Noguchi, J.,Chaen, K.,Vu, N.T.,Akasaka, T.,Shimada, H.,Nakashima, T.,Nishi, A.,Satoh, H.,Omori, T.,Kakuta, Y.,Kimura, M. Crystal structure of the branching enzyme I (BEI) from Oryza sativa L with implications for catalysis and substrate binding. Glycobiology 2011 21 1108 1116 3AOV Crystal structure of Pyrococcus horikoshii kynurenine aminotransferase in complex with PLP 2010-10-07 2011-10-12 Okada, K.,Angkawidjaja, C.,Koga, Y.,Takano, K.,Kanaya, Y. Characterization of kynurenine aminotransferase from hyperthermophilic archaeon: enzymatic activity for conversion to kynurenic acid is allosterically regulated by alpha-ketoglutaric acid cooperatively with kynurenine To be Published 0 0 0 0 3AOW Crystal structure of Pyrococcus horikoshii kynurenine aminotransferase in complex with AKG 2010-10-07 2011-10-12 Okada, K.,Angkawidjaja, C.,Koga, Y.,Takano, K.,Kanaya, Y. Characterization of kynurenine aminotransferase from hyperthermophilic archaeon: enzymatic activity for conversion to kynurenic acid is allosterically regulated by alpha-ketoglutaric acid cooperatively with kynurenine To be Published 0 0 0 0 3AMO 21169693 Time-resolved X-ray Crystal Structure Analysis of Enzymatic Reaction of Copper Amine Oxidase from Arthrobacter globiformis 2010-08-20 2011-11-23 Kataoka, M.,Oya, H.,Tominaga, A.,Otsu, M.,Okajima, T.,Tanizawa, K.,Yamaguchi, H. Detection of the reaction intermediates catalyzed by a copper amine oxidase. J.SYNCHROTRON RADIAT. 2011 18 58 61 3AXG 22187439 Structure of 6-aminohexanoate-oligomer hydrolase 2011-04-04 2011-12-21 Negoro, S.,Shibata, N.,Tanaka, Y.,Yasuhira, K.,Shibata, H.,Hashimoto, H.,Lee, Y.H.,Oshima, S.,Santa, R.,Mochiji, K.,Goto, Y.,Ikegami, T.,Nagai, K.,Kato, D.,Takeo, M.,Higuchi, Y. Three-dimensional structure of nylon hydrolase and mechanism of nylon-6 hydrolysis J.Biol.Chem. 2012 287 5079 5090 3ATH Crystal structure of Pyrococcus horikoshii kynurenine aminotransferase in complex with four AKGs as substrates and allosteric effectors 2011-01-05 2012-01-18 Okada, K.,Angkawidjaja, C.,Koga, Y.,Takano, K.,Kanaya, Y. Characterization of kynurenine aminotransferase from hyperthermophilic archaeon: enzymatic activity for conversion to kynurenic acid is allosterically regulated by alpha-ketoglutaric acid cooperatively with kynurenine To be Published 0 0 0 0 3VLU 22486720 Crystal structure of Sphingomonas sp. A1 alginate-binding protein AlgQ1 in complex with saturated trimannuronate 2011-12-05 2012-01-25 Nishitani, Y.,Maruyama, Y.,Itoh, T.,Mikami, B.,Hashimoto, W.,Murata, K. Recognition of heteropolysaccharide alginate by periplasmic solute-binding proteins of a bacterial ABC transporter Biochemistry 2012 51 3622 3633 3VLV 22486720 Crystal structure of Sphingomonas sp. A1 alginate-binding ptotein AlgQ1 in complex with unsaturated triguluronate 2011-12-05 2012-01-25 Nishitani, Y.,Maruyama, Y.,Itoh, T.,Mikami, B.,Hashimoto, W.,Murata, K. Recognition of heteropolysaccharide alginate by periplasmic solute-binding proteins of a bacterial ABC transporter Biochemistry 2012 51 3622 3633 3VLW 22486720 Crystal structure of Sphingomonas sp. A1 alginate-binding protein AlgQ1 in complex with mannuronate-guluronate disaccharide 2011-12-05 2012-01-25 Nishitani, Y.,Maruyama, Y.,Itoh, T.,Mikami, B.,Hashimoto, W.,Murata, K. Recognition of heteropolysaccharide alginate by periplasmic solute-binding proteins of a bacterial ABC transporter Biochemistry 2012 51 3622 3633 3QHM 21557724 Crystal analysis of the complex structure, E342A-cellotetraose, of endocellulase from pyrococcus horikoshii 2011-01-26 2012-02-01 Kim, H.-W.,Ishikawa, K. Functional analysis of hyperthermophilic endocellulase from Pyrococcus horikoshii by crystallographic snapshots Biochem.J. 2011 437 223 230 3QHN 21557724 Crystal analysis of the complex structure, E201A-cellotetraose, of endocellulase from pyrococcus horikoshii 2011-01-26 2012-02-01 Kim, H.-W.,Ishikawa, K. Functional analysis of hyperthermophilic endocellulase from Pyrococcus horikoshii by crystallographic snapshots Biochem.J. 2011 437 223 230 3AUK Crystal structure of a lipase from Geobacillus sp. SBS-4S 2011-02-08 2012-02-08 Tayyab, M.,Angkawidjaja, C.,Kanaya, S.,Rashid, N. Crystal structure of a lipase from Geobacillus sp. SBS-4S TO BE PUBLISHED 0 0 0 0 3SMH 21903274 Crystal structure of major peanut allergen Ara h 1 2011-06-28 2012-02-15 Cabanos, C.,Urabe, H.,Tandang-Silvas, M.R.,Utsumi, S.,Mikami, B.,Maruyama, N. Crystal structure of the major peanut allergen Ara h 1. Mol.Immunol. 2011 49 115 123 3AV7 Crystal structure of Pyrococcus horikoshii kynurenine aminotransferase in complex with PMP, KYN as substrates and KYA as products 2011-02-23 2012-03-07 Okada, K.,Angkawidjaja, C.,Koga, Y.,Takano, K.,Kanaya, Y. Structural insight into kynurenic acid excretion mechanisms of kynurenine aminotransferase in the hyperthermophilic archaeon Pyrococcus horikoshii To be Published 0 0 0 0 3B0B 22304917 Crystal structure of the chicken CENP-S/CENP-X complex 2011-06-08 2012-03-07 Nishino, T.,Takeuchi, K.,Gascoigne, K.E.,Suzuki, A.,Hori, T.,Oyama, T.,Morikawa, K.,Cheeseman, I.M.,Fukagawa, T. CENP-T-W-S-X Forms a Unique Centromeric Chromatin Structure with a Histone-like Fold. Cell(Cambridge,Mass.) 2012 148 487 501 3B0C 22304917 Crystal structure of the chicken CENP-T histone fold/CENP-W complex, crystal form I 2011-06-08 2012-03-07 Nishino, T.,Takeuchi, K.,Gascoigne, K.E.,Suzuki, A.,Hori, T.,Oyama, T.,Morikawa, K.,Cheeseman, I.M.,Fukagawa, T. CENP-T-W-S-X Forms a Unique Centromeric Chromatin Structure with a Histone-like Fold. Cell(Cambridge,Mass.) 2012 148 487 501 3B0C 22304917 Crystal structure of the chicken CENP-T histone fold/CENP-W complex, crystal form I 2011-06-08 2012-03-07 Nishino, T.,Takeuchi, K.,Gascoigne, K.E.,Suzuki, A.,Hori, T.,Oyama, T.,Morikawa, K.,Cheeseman, I.M.,Fukagawa, T. CENP-T-W-S-X Forms a Unique Centromeric Chromatin Structure with a Histone-like Fold. Cell(Cambridge,Mass.) 2012 148 487 501 3VH5 22304917 Crystal structure of the chicken CENP-T histone fold/CENP-W/CENP-S/CENP-X heterotetrameric complex, crystal form I 2011-08-23 2012-03-07 Nishino, T.,Takeuchi, K.,Gascoigne, K.E.,Suzuki, A.,Hori, T.,Oyama, T.,Morikawa, K.,Cheeseman, I.M.,Fukagawa, T. CENP-T-W-S-X Forms a Unique Centromeric Chromatin Structure with a Histone-like Fold Cell(Cambridge,Mass.) 2012 148 487 501 3VNX 22419613 Crystal structure of ferritin from multicellular green algae, Ulva pertusa. 2012-01-18 2012-03-28 Masuda, T.,Morimoto, S.I.,Mikami, B.,Toyohara, H. The extension peptide of plant ferritin from sea lettuce contributes to shell stability and surface hydrophobicity. Protein Sci. 2012 21 786 796 3B2C 22020801 Crystal structure of the collagen triple helix model [{PRO-HYP(R)-GLY}4-{HYP(S)-Pro-GLY}2-{PRO-HYP(R)-GLY}4]3 2011-07-26 2012-04-04 Motooka, D.,Kawahara, K.,Nakamura, S.,Doi, M.,Nishi, Y.,Nishiuchi, Y.,Kee Kang, Y.,Nakazawa, T.,Uchiyama, S.,Yoshida, T.,Ohkubo, T.,Kobayashi, Y. The triple helical structure and stability of collagen model peptide with 4(S)-hydroxyprolyl-pro-gly units Biopolymers 2011 98 111 121 3AW8 Crystal structure of N5-carboxyaminoimidazole ribonucleotide synthetase from Thermus thermophilus HB8 2011-03-15 2012-04-11 Okada, K.,Taka, H.,Tsunoda, S.,Tamura, S.,Miyazawa, R.,Baba, S.,Kanagawa, M.,Nakagawa, N.,Ebihara, A.,Kuramitsu, S.,Yokoyama, S.,Kawai, G.,Sampei, G. Crystal structures of N5-carboxyaminoimidazole ribonucleotide synthetase, PurK, from thermophilic bacteria To be Published 0 0 0 0 3VI7 22418579 Human hematopoietic prostaglandin D synthase inhibitor complex structures 2011-09-21 2012-04-18 Kado, Y.,Aritake, K.,Uodome, N.,Okano, Y.,Okazaki, N.,Matsumura, H.,Urade, Y.,Inoue, T. Human hematopoietic prostaglandin D synthase inhibitor complex structures J.Biochem. 2012 151 447 455 3VLG 22369967 Crystal structure of the W150A mutant LOX-1 CTLD showing impaired OxLDL binding 2011-12-01 2012-04-18 Nakano, S.,Sugihara, M.,Yamada, R.,Katayanagi, K.,Tate, S. Structural implication for the impaired binding of W150A mutant LOX-1 to oxidized low density lipoprotein, OxLDL Biochim.Biophys.Acta 2012 1824 739 749 3VKQ 22499059 Assimilatory nitrite reductase (Nii3) - NO2 complex from tobbaco leaf analysed with middle X-ray dose 2011-11-20 2012-04-25 Nakano, S.,Takahashi, M.,Sakamoto, A.,Morikawa, H.,Katayanagi, K. The reductive reaction mechanism of tobacco nitrite reductase derived from a combination of crystal structures and ultraviolet-visible microspectroscopy Proteins 2012 80 2035 2045 3VKR 22499059 Assimilatory nitrite reductase (Nii3) - NO2 complex from tobbaco leaf analysed with high X-ray dose 2011-11-20 2012-04-25 Nakano, S.,Takahashi, M.,Sakamoto, A.,Morikawa, H.,Katayanagi, K. The reductive reaction mechanism of tobacco nitrite reductase derived from a combination of crystal structures and ultraviolet-visible microspectroscopy Proteins 2012 80 2035 2045 3VKT 22499059 Assimilatory nitrite reductase (Nii3) - NH2OH complex from tobbaco leaf 2011-11-20 2012-04-25 Nakano, S.,Takahashi, M.,Sakamoto, A.,Morikawa, H.,Katayanagi, K. The reductive reaction mechanism of tobacco nitrite reductase derived from a combination of crystal structures and ultraviolet-visible microspectroscopy Proteins 2012 80 2035 2045 3AY2 Crystal structure of Neisserial azurin 2011-04-24 2012-05-02 Hashimoto, W.,Ochiai, A.,Yamada, T.,Chakrabarty, A.M.,Murata, K. Crystal structure of Neisserial Azurin To be Published 0 0 0 0 3AY2 Crystal structure of Neisserial azurin 2011-04-24 2012-05-02 Hashimoto, W.,Ochiai, A.,Yamada, T.,Chakrabarty, A.M.,Murata, K. Crystal structure of Neisserial Azurin To be Published 0 0 0 0 3VOU 22531178 The crystal structure of NaK-NavSulP chimera channel 2012-02-10 2012-05-02 Irie, K.,Shimomura, T.,Fujiyoshi, Y. The C-terminal helical bundle of the tetrameric prokaryotic sodium channel accelerates the inactivation rate Nat Commun 2012 3 793 793 3AZ4 22383363 Crystal structure of Co/O-HEWL 2011-05-20 2012-05-09 Abe, S.,Tsujimoto, M.,Yoneda, K.,Ohba, M.,Hikage, T.,Takano, M.,Kitagawa, S.,Ueno, T. Porous protein crystals as reaction vessels for controlling magnetic properties of nanoparticles Small 2012 8 1314 1319 3AZ5 22383363 Crystal structure of Pt/O-HEWL 2011-05-20 2012-05-09 Abe, S.,Tsujimoto, M.,Yoneda, K.,Ohba, M.,Hikage, T.,Takano, M.,Kitagawa, S.,Ueno, T. Porous protein crystals as reaction vessels for controlling magnetic properties of nanoparticles Small 2012 8 1314 1319 3RWB Crystal structure of complex of 4PAL (4-Pyridoxolactone) and PLDH (tetrameric pyridoxal 4-dehydrogenase) from Mesorhizobium loti 2011-05-08 2012-05-09 Yagi, T.,Chu, H.N. Crystal structure of complex of 4PAL (4-Pyridoxolactone) and PLDH (tetrameric pyridoxal 4-dehydrogenase) from Mesorhizobium loti TO BE PUBLISHED 0 0 0 0 3VHF 22326916 plant thaumatin I at pH 8.0 2011-08-24 2012-05-16 Masuda, T.,Ohta, K.,Mikami, B.,Kitabatake, N.,Tani, F. Atomic structure of the sweet-tasting protein thaumatin I at pH 8.0 reveals the large disulfide-rich region in domain II to be sensitive to a pH change Biochem.Biophys.Res.Commun. 2012 419 72 76 3UY5 22547814 crystal structure of Eis from Mycobacterium tuberculosis 2011-12-05 2012-05-23 Kim, K.H.,An, D.R.,Song, J.,Yoon, J.Y.,Kim, H.S.,Yoon, H.J.,Im, H.N.,Kim, J.,Kim, D.J.,Lee, S.J.,Kim, K.H.,Lee, H.M.,Kim, H.J.,Jo, E.K.,Lee, J.Y.,Suh, S.W. Mycobacterium tuberculosis Eis protein initiates suppression of host immune responses by acetylation of DUSP16/MKP-7 Proc.Natl.Acad.Sci.USA 2012 0 0 0 3VHZ 22641602 Crystal structure of the trans isomer of the L93A mutant of bacteriorhodopsin 2011-09-13 2012-06-13 Zhang, J.,Yamazaki, Y.,Hikake, M.,Murakami, M.,Ihara, K.,Kouyama, T. Crystal structure of the O intermediate of the Leu93Ala mutant of bacteriorhodopsin Proteins 2012 80 2384 2396 3VI0 22641602 Crystal structure of the O intermediate of the L93A mutant of bacteriorhodopsin 2011-09-13 2012-06-13 Zhang, J.,Yamazaki, Y.,Hikake, M.,Murakami, M.,Ihara, K.,Kouyama, T. Crystal structure of the O intermediate of the Leu93Ala mutant of bacteriorhodopsin Proteins 2012 80 2384 2396 3B1C 22674431 Crystal structure of betaC-S lyase from Streptococcus anginosus: Internal aldimine form 2011-06-29 2012-06-27 Kezuka, Y.,Yoshida, Y.,Nonaka, T. Structural insights into catalysis by beta C-S lyase from Streptococcus anginosus Proteins 2012 80 2447 2458 3U7K 22751663 Crystal structures of the Staphylococcus aureus peptide deformylase in complex with two classes of new inhibitors 2011-10-14 2012-06-27 Lee, S.J.,Lee, S.-J.,Lee, S.K.,Yoon, H.-J.,Lee, H.H.,Kim, K.K.,Lee, B.J.,Lee, B.I.,Suh, S.W. Structures of Staphylococcus aureus peptide deformylase in complex with two classes of new inhibitors Acta Crystallogr.,Sect.D 2012 68 784 793 3U7L 22751663 Crystal structures of the Staphylococcus aureus peptide deformylase in complex with two classes of new inhibitors 2011-10-14 2012-06-27 Lee, S.J.,Lee, S.-J.,Lee, S.K.,Yoon, H.-J.,Lee, H.H.,Kim, K.K.,Lee, B.J.,Lee, B.I.,Suh, S.W. Structures of Staphylococcus aureus peptide deformylase in complex with two classes of new inhibitors Acta Crystallogr.,Sect.D 2012 68 784 793 3VOV 22591843 Crystal Structure of ROK Hexokinase from Thermus thermophilus 2012-02-21 2012-06-27 Nakamura, T.,Kashima, Y.,Mine, S.,Oku, T.,Uegaki, K. Characterization and crystal structure of the thermophilic ROK hexokinase from Thermus thermophilus J.Biosci.Bioeng. 2012 0 0 0 4F13 22948922 Alginate lyase A1-III Y246F complexed with tetrasaccharide 2012-05-06 2012-06-27 Mikami, B.,Ban, M.,Suzuki, S.,Yoon, H.-J.,Miyake, O.,Yamasaki, M.,Ogura, K.,Maruyama, Y.,Hashimoto, W.,Murata, K. Induced-fit motion of a lid loop involved in catalysis in alginate lyase A1-III Acta Crystallogr.,Sect.D 2012 68 1207 1216 3VGT 22275000 Wild-type nucleoside diphosphate kinase derived from Halomonas sp. 593 2011-08-21 2012-07-11 Arai, S.,Yonezawa, Y.,Okazaki, N.,Matsumoto, F.,Tamada, T.,Tokunaga, H.,Ishibashi, M.,Blaber, M.,Tokunaga, M.,Kuroki, R. A structural mechanism for dimeric to tetrameric oligomer conversion in Halomonas sp. nucleoside diphosphate kinase Protein Sci. 2012 21 498 510 3VGU 22275000 E134A mutant nucleoside diphosphate kinase derived from Halomonas sp. 593 2011-08-21 2012-07-11 Arai, S.,Yonezawa, Y.,Okazaki, N.,Matsumoto, F.,Tamada, T.,Tokunaga, H.,Ishibashi, M.,Blaber, M.,Tokunaga, M.,Kuroki, R. A structural mechanism for dimeric to tetrameric oligomer conversion in Halomonas sp. nucleoside diphosphate kinase Protein Sci. 2012 21 498 510 3VHQ 22686281 Crystal structure of the Ca6 site mutant of Pro-SA-subtilisin 2011-09-01 2012-07-11 Uehara, R.,Takeuchi, Y.,Tanaka, S.I.,Takano, K.,Koga, Y.,Kanaya, S. Requirement of Ca(2+) Ions for the Hyperthermostability of Tk-Subtilisin from Thermococcus kodakarensis Biochemistry 2012 51 5369 5378 3SMV X-ray Crystal Structure of L-Azetidine-2-Carboxylate Hydrolase 2011-06-28 2012-07-18 Jitsumori, K.,Toyoda, M.,Mikami, B.,Wackett, L.P.,Kurihara, T.,Esaki, N. Crystal structure of L-Azetidine-2-carboxylate hydrolase from Pseudomonas sp. strain A2C To be Published 0 0 0 0 3SXO Mycobacterium tuberculosis Eis protein initiates modulation of host immune responses by acetylation of DUSP16/MKP-7 2011-07-15 2012-07-25 Kim, K.H.,An, D.R.,Yoon, J.Y.,Kim, H.S.,Yoon, H.J.,Song, J.S.,Im, H.N.,Kim, J.,Kim, D.J.,Lee, S.J.,Kim, H.J.,Lee, J.Y.,Suh, S.W. Mycobacterium tuberculosis Eis protein initiates modulation of host immune responses by acetylation of DUSP16/MKP-7 To be Published 0 0 0 0 3VI2 22740703 Crystal Structure Analysis of Plasmodium falciparum OMP Decarboxylase in complex with inhibitor HMOA 2011-09-16 2012-08-01 Takashima, Y.,Mizohata, E.,Krungkrai, S.R.,Fukunishi, Y.,Kinoshita, T.,Sakata, T.,Matsumura, H.,Krungkrai, J.,Horii, T.,Inoue, T. The in silico screening and X-ray structure analysis of the inhibitor complex of Plasmodium falciparum orotidine 5'-monophosphate decarboxylase J.Biochem. 2012 152 133 138 3T37 Crystal structure of pyridoxine 4-oxidase from Mesorbium loti 2011-07-25 2012-08-15 Mugo, A.N.,Kobayashi, J.,Mikami, B.,Ohnishi, K.,Yagi, T. Structure biology and crystallization communication TO BE PUBLISHED 0 0 0 0 4F8V 24900542 Crystal structure of the bacterial ribosomal decoding site in complex with sisomicin (P21212 form) 2012-05-18 2012-08-15 Kondo, J.,Koganei, M.,Kasahara, T. Crystal structure and specific binding mode of sisomicin to the bacterial ribosomal decoding site. Acs Med.Chem.Lett. 2012 3 741 744 3VI8 22185225 Human PPAR alpha ligand binding domain in complex with a synthetic agonist APHM13 2011-09-25 2012-08-29 Kuwabara, N.,Oyama, T.,Tomioka, D.,Ohashi, M.,Yanagisawa, J.,Shimizu, T.,Miyachi, H. Peroxisome proliferator-activated receptors (PPARs) have multiple binding points that accommodate ligands in various conformations: phenylpropanoic acid-type PPAR ligands bind to PPAR in different conformations, depending on the subtype J.Med.Chem. 2012 55 893 902 4FZ2 22941657 Crystal structure of the fourth type of archaeal tRNA splicing endonuclease from Candidatus Micrarchaeum acidiphilum ARMAN-2 2012-07-06 2012-09-12 Hirata, A.,Fujishima, K.,Yamagami, R.,Kawamura, T.,Banfield, J.F.,Kanai, A.,Hori, H. X-ray structure of the fourth type of archaeal tRNA splicing endonuclease: insights into the evolution of a novel three-unit composition and a unique loop involved in broad substrate specificity Nucleic Acids Res. 2012 40 10554 10566 3VOR 22993096 Crystal Structure Analysis of the CofA 2012-02-06 2012-09-26 Fukakusa, S.,Kawahara, K.,Nakamura, S.,Iwashita, T.,Baba, S.,Nishimura, M.,Kobayashi, Y.,Honda, T.,Iida, T.,Taniguchi, T.,Ohkubo, T. Structure of the CFA/III major pilin subunit CofA from human enterotoxigenic Escherichia coli determined at 0.90 A resolution by sulfur-SAD phasing Acta Crystallogr.,Sect.D 2012 68 1418 1429 3VK9 22579926 Crystal structure of delta-class glutathione transferase from silkmoth 2011-11-10 2012-10-03 Yamamoto, K.,Usuda, K.,Kakuta, Y.,Kimura, M.,Higashiura, A.,Nakagawa, A.,Aso, Y.,Suzuki, M. Structural basis for catalytic activity of a silkworm Delta-class glutathione transferase Biochim.Biophys.Acta 2012 1820 1469 1474 3VXD Crystal structure of unsaturated glucuronyl hydrolase mutant D115N from Streptcoccus agalactiae 2012-09-11 2012-10-03 Nakamichi, Y.,Maruyama, Y.,Mikami, B.,Hashimoto, W.,Murata, K. Crystal structure of unsaturated glucuronyl hydrolase mutant D115N from Streptcoccus agalactiae To be Published 0 0 0 0 3VYM 23035813 Dimeric Hydrogenobacter thermophilus cytochrome c552 2012-09-28 2012-11-07 Hayashi, Y.,Nagao, S.,Osuka, H.,Komori, H.,Higuchi, Y.,Hirota, S. Domain Swapping of the Heme and N-Terminal alpha-Helix in Hydrogenobacter thermophilus Cytochrome c(552) Dimer Biochemistry 2012 51 8608 8616 3VKK Crystal Structure Of The Covalent Intermediate Of Human Cytosolic Beta-Glucosidase-mannose complex 2011-11-17 2012-11-21 Noguchi, J.,Hayashi, Y.,Okino, N.,Ito, M.,Kimura, M.,Kakuta, Y. Structural basis for inhibition mechanism of human cytosolic beta-glucosidase by monnoside To be Published 0 0 0 0 3VN4 Crystal structure of the exosite-containing fragment of human ADAMTS13 (P475S mutant) 2011-12-21 2012-12-26 Nakayama, D.,Akiyama, M.,Takeda, S.,Kokame, K.,Takagi, J.,Miyata, T. Structural analysis and biochemical studies of ADAMTS13 P475S mutant To be Published 0 0 0 0 3VYQ 23316048 Crystal structure of the methyl CpG Binding Domain of MBD4 in complex with the 5mCG/TG sequence in space group P1 2012-10-02 2013-01-16 Otani, J.,Arita, K.,Kato, T.,Kinoshita, M.,Kimura, H.,Suetake, I.,Tajima, S.,Ariyoshi, M.,Shirakawa, M. Structural basis of the versatile DNA recognition ability of the methyl-CpG binding domain of methyl-CpG binding domain protein 4 J.Biol.Chem. 2013 288 6351 6362 3W0K Crystal Structure of a glycoside hydrolase 2012-10-31 2013-02-20 Oyama, T.,Schmitz, G.E.,Dodd, D.,Han, Y.,Burnett, A.,Nagasawa, N.,Mackie, R.I.,Nakamura, H.,Morikawa, K.,Cann, I.K.O. Crystal structure of a glycoside hydrolase To be Published 0 0 0 0 3W6H Crystal structure of 19F probe-labeled hCAI in complex with acetazolamide 2013-02-14 2013-03-13 Takaoka, Y.,Kioi, Y.,Morito, A.,Otani, J.,Arita, K.,Ashihara, E.,Ariyoshi, M.,Tochio, H.,Shirakawa, M.,Hamachi, I. Quantitative Comparison of Protein Dynamics in Live Cells and In Vitro by In-Cell 19F-NMR To be published 0 0 0 0 3W6I Crystal structure of 19F probe-labeled hCAI 2013-02-14 2013-03-13 Takaoka, Y.,Kioi, Y.,Morito, A.,Otani, J.,Arita, K.,Ashihara, E.,Ariyoshi, M.,Tochio, H.,Shirakawa, M.,Hamachi, I. Quantitative Comparison of Protein Dynamics in Live Cells and In Vitro by In-Cell 19F-NMR To be published 0 0 0 0 3W4Y Crystal structure of yeast Erv1 core 2013-01-17 2013-03-20 Kawano, S.,Terao, K.,Watanabe, N.,Endo, T. Crystal structure of yeast Erv1 core To be published 0 0 0 0 3VZA 23334297 Crystal structure of the chicken Spc24-Spc25 globular domain in complex with CENP-T peptide 2012-10-09 2013-04-03 Nishino, T.,Rago, F.,Hori, T.,Tomii, K.,Cheeseman, I.M.,Fukagawa, T. CENP-T provides a structural platform for outer kinetochore assembly Embo J. 2013 32 424 436 3VSO 23490155 Human PPAR gamma ligand binding domain in complex with a gamma selective agonist mekt21 2012-04-30 2013-05-01 Ohashi, M.,Oyama, T.,Putranto, E.W.,Waku, T.,Nobusada, H.,Kataoka, K.,Matsuno, K.,Yashiro, M.,Morikawa, K.,Huh, N.H.,Miyachi, H. Design and synthesis of a series of alpha-benzyl phenylpropanoic acid-type peroxisome proliferator-activated receptor (PPAR) gamma partial agonists with improved aqueous solubility Bioorg.Med.Chem. 2013 21 2319 2332 3VSP Human PPAR gamma ligand binding domain in complex with a gamma selective agonist mekt28 2012-04-30 2013-05-01 Oyama, T.,Waku, T.,Ohashi, M.,Morikawa, K.,Miyachi, H. Human PPAR gamma ligand binding domain in complex with a gamma selective agonist mekt28 To be Published 0 0 0 0 3VU2 22771800 Structure of the Starch Branching Enzyme I (BEI) complexed with maltopentaose from Oryza sativa L 2012-06-14 2013-05-08 Chaen, K.,Noguchi, J.,Omori, T.,Kakuta, Y.,Kimura, M. Crystal structure of the rice branching enzyme I (BEI) in complex with maltopentaose. Biochem.Biophys.Res.Commun. 2012 424 508 511 3W6B 23658014 Crystal structure of catalytic domain of chitinase from Ralstonia sp. A-471 2013-02-14 2013-05-15 Arimori, T.,Kawamoto, N.,Shinya, S.,Okazaki, N.,Nakazawa, M.,Miyatake, K.,Fukamizo, T.,Ueda, M.,Tamada, T. Crystal Structures of the Catalytic Domain of a Novel Glycohydrolase Family 23 Chitinase from Ralstonia sp. A-471 Reveals a Unique Arrangement of the Catalytic Residues for Inverting Chitin Hydrolysis J.Biol.Chem. 2013 288 18696 18706 4FBZ 23625688 Crystal structure of deltarhodopsin from Haloterrigena thermotolerans 2012-05-23 2013-05-15 Zhang, J.,Mizuno, K.,Murata, Y.,Koide, H.,Murakami, M.,Ihara, K.,Kouyama, T. Crystal structure of deltarhodopsin-3 from Haloterrigena thermotolerans Proteins 2013 81 1585 1592 4FS5 23578858 Crystal structure of the Z-DNA hexamer CGCGCG at 500 mM MgCl2 2012-06-26 2013-05-15 Chatake, T.,Sunami, T. Direct interactions between Z-DNA and alkaline earth cations, discovered in the presence of high concentrations of MgCl2 and CaCl2 J.Inorg.Biochem. 2013 124 15 25 4FS6 23578858 Crystal structure of the Z-DNA hexamer CGCGCG at 500 mM CaCl2 2012-06-27 2013-05-15 Chatake, T.,Sunami, T. Direct interactions between Z-DNA and alkaline earth cations, discovered in the presence of high concentrations of MgCl2 and CaCl2 J.Inorg.Biochem. 2013 124 15 25 4GA6 23659790 Crystal structure of AMP phosphorylase C-terminal deletion mutant in complex with substrates 2012-07-25 2013-05-15 Nishitani, Y.,Aono, R.,Nakamura, A.,Sato, T.,Atomi, H.,Imanaka, T.,Miki, K. Structure analysis of archaeal AMP phosphorylase reveals two unique modes of dimerization J.Mol.Biol. 2013 425 2709 2721 3VSM The crystal structure of novel chondroition lyase ODV-E66, baculovirus envelope protein 2012-04-27 2013-05-22 Kawaguchi, Y.,Sugiura, N.,Kimata, K.,Kimura, M.,Kakuta, Y. The crystal structure of novel chondroition lyase ODV-E66, baculovirus envelope protein To be Published 0 0 0 0 3VSN The crystal structure of novel chondroition lyase ODV-E66, baculovirus envelope protein 2012-04-27 2013-05-22 Kawaguchi, Y.,Sugiura, N.,Kimata, K.,Kimura, M.,Kakuta, Y. The crystal structure of novel chondroition lyase ODV-E66, baculovirus envelope protein To be Published 0 0 0 0 4HA6 23501672 Crystal structure of pyridoxine 4-oxidase - pyridoxamine complex 2012-09-25 2013-06-05 Mugo, A.N.,Kobayashi, J.,Yamasaki, T.,Mikami, B.,Ohnishi, K.,Yoshikane, Y.,Yagi, T. Crystal structure of pyridoxine 4-oxidase from Mesorhizobium loti. Biochim.Biophys.Acta 2013 1834 953 963 3VVK 23442859 An M-like Reaction State of the azide-bound purple form of pharaonis halorhodopsin 2012-07-26 2013-06-19 Nakanishi, T.,Kanada, S.,Murakami, M.,Ihara, K.,Kouyama, T. Large deformation of helix F during the photoreaction cycle of Pharaonis halorhodopsin in complex with azide Biophys.J. 2013 104 377 385 3W2E 23831226 Crystal structure of oxidation intermediate (20 min) of NADH-cytochrome b5 reductase from pig liver 2012-11-28 2013-07-17 Yamada, M.,Tamada, T.,Takeda, K.,Matsumoto, F.,Ohno, H.,Kosugi, M.,Takaba, K.,Shoyama, Y.,Kimura, S.,Kuroki, R.,Miki, K. Elucidations of the catalytic cycle of NADH-cytochrome b5 reductase by X-ray crystallography: new insights into regulation of efficient electron transfer J.Mol.Biol. 2013 425 4295 4306 3W2G 23831226 Crystal structure of fully reduced form of NADH-cytochrome b5 reductase from pig liver 2012-11-28 2013-07-17 Yamada, M.,Tamada, T.,Takeda, K.,Matsumoto, F.,Ohno, H.,Kosugi, M.,Takaba, K.,Shoyama, Y.,Kimura, S.,Kuroki, R.,Miki, K. Elucidations of the catalytic cycle of NADH-cytochrome b5 reductase by X-ray crystallography: new insights into regulation of efficient electron transfer J.Mol.Biol. 2013 425 4295 4306 3W2I 23831226 Crystal structure of re-oxidized form (60 min) of NADH-cytochrome b5 reductase from pig liver 2012-11-28 2013-07-17 Yamada, M.,Tamada, T.,Takeda, K.,Matsumoto, F.,Ohno, H.,Kosugi, M.,Takaba, K.,Shoyama, Y.,Kimura, S.,Kuroki, R.,Miki, K. Elucidations of the catalytic cycle of NADH-cytochrome b5 reductase by X-ray crystallography: new insights into regulation of efficient electron transfer J.Mol.Biol. 2013 425 4295 4306 4GPH Structure of HmuO, heme oxygenase from Corynebacterium diphtheriae, in complex with the putative reaction intermediates between Fe3+-biliverdin and biliverdin (data set IV) 2012-08-21 2013-08-21 Unno, M.,Ardevol, A.,Rovira, C.,Ikeda-Saito, M. Crystal Structures of the Substrate-Free and the Product-Bound forms of HmuO, a Heme Oxygenase from Corynebacterium diphtheriae To be Published 0 0 0 0 3VVG The Crystal Structure of Cellulase-Inhibitor Complex. 2012-07-24 2013-08-28 Ishikawa, K.,Maeno, Y.,Kataoka, M. The Crystal Structure of Cellulase-Inhibitor Complex. TO BE PUBLISHED 0 0 0 0 3VWO Crystal structure of peptidoglycan hydrolase mutant from Sphingomonas sp. A1 2012-08-30 2013-09-04 Maruyama, Y.,Mikami, B.,Hashimoto, W.,Murata, K. Crystal structure of peptidoglycan hydrolase mutant from Sphingomonas sp. A1 To be Published 0 0 0 0 3WAS 23954514 Crystal structure of 4-O-beta-D-mannosyl-D-glucose phosphorylase MGP complexed with Man-Glc+PO4 2013-05-08 2013-09-04 Nakae, S.,Ito, S.,Higa, M.,Senoura, T.,Wasaki, J.,Hijikata, A.,Shionyu, M.,Ito, S.,Shirai, T. Structure of Novel Enzyme in Mannan Biodegradation Process 4-O-beta-d-Mannosyl-d-Glucose Phosphorylase MGP J.Mol.Biol. 2013 425 4468 4478 3WAT 23954514 Crystal structure of 4-O-beta-D-mannosyl-D-glucose phosphorylase MGP complexed with Man+Glc 2013-05-08 2013-09-04 Nakae, S.,Ito, S.,Higa, M.,Senoura, T.,Wasaki, J.,Hijikata, A.,Shionyu, M.,Ito, S.,Shirai, T. Structure of Novel Enzyme in Mannan Biodegradation Process 4-O-beta-d-Mannosyl-d-Glucose Phosphorylase MGP J.Mol.Biol. 2013 425 4468 4478 3WAU 23954514 Crystal structure of 4-O-beta-D-mannosyl-D-glucose phosphorylase MGP complexed with M1P 2013-05-08 2013-09-04 Nakae, S.,Ito, S.,Higa, M.,Senoura, T.,Wasaki, J.,Hijikata, A.,Shionyu, M.,Ito, S.,Shirai, T. Structure of Novel Enzyme in Mannan Biodegradation Process 4-O-beta-d-Mannosyl-d-Glucose Phosphorylase MGP J.Mol.Biol. 2013 425 4468 4478 4KMI 23954514 Crystal structure of 4-O-beta-D-mannosyl-D-glucose phosphorylase MGP complexed with PO4 2013-05-08 2013-09-04 Nakae, S.,Ito, S.,Higa, M.,Senoura, T.,Wasaki, J.,Hijikata, A.,Shionyu, M.,Ito, S.,Shirai, T. Structure of Novel Enzyme in Mannan Biodegradation Process 4-O-beta-d-Mannosyl-d-Glucose Phosphorylase MGP J.Mol.Biol. 2013 425 4468 4478 3WA3 24311589 Crystal structure of copper amine oxidase from arthrobacter globiformis in N2 condition 2013-04-22 2013-09-11 Murakawa, T.,Hayashi, H.,Sunami, T.,Kurihara, K.,Tamada, T.,Kuroki, R.,Suzuki, M.,Tanizawa, K.,Okajima, T. High-resolution crystal structure of copper amine oxidase from Arthrobacter globiformis: assignment of bound diatomic molecules as O2 Acta Crystallogr.,Sect.D 2013 69 2483 2494 3W1C 24014139 Structure of a pressure sensitive YFP variant YFP-G1 2012-11-14 2013-10-02 Watanabe, T.M.,Imada, K.,Yoshizawa, K.,Nishiyama, M.,Kato, C.,Abe, F.,Morikawa, T.J.,Kinoshita, M.,Fujita, H.,Yanagida, T. Glycine insertion makes yellow fluorescent protein sensitive to hydrostatic pressure. Plos One 2013 8 0 0 3W1D 24014139 Structure of a pressure sensitive YFP variant YFP-G3 2012-11-14 2013-10-02 Watanabe, T.M.,Imada, K.,Yoshizawa, K.,Nishiyama, M.,Kato, C.,Abe, F.,Morikawa, T.J.,Kinoshita, M.,Fujita, H.,Yanagida, T. Glycine insertion makes yellow fluorescent protein sensitive to hydrostatic pressure. Plos One 2013 8 0 0 3WBG 24121341 Structure of the human heart fatty acid-binding protein in complex with 1-anilinonaphtalene-8-sulphonic acid 2013-05-16 2013-10-30 Hirose, M.,Sugiyama, S.,Ishida, H.,Niiyama, M.,Matsuoka, D.,Hara, T.,Mizohata, E.,Murakami, S.,Inoue, T.,Matsuoka, S.,Murata, M. Structure of the human-heart fatty-acid-binding protein 3 in complex with the fluorescent probe 1-anilinonaphthalene-8-sulphonic acid J.SYNCHROTRON RADIAT. 2013 20 923 928 4HAK Multicopper Oxidase CueO mutant E506A 2012-09-26 2013-10-30 Komori, H.,Kataoka, K.,Sakurai, T.,Higuchi, Y. Multicopper Oxidase CueO mutant E506A TO BE PUBLISHED 0 0 0 0 4HAL Multicopper Oxidase CueO mutant E506I 2012-09-26 2013-10-30 Komori, H.,Kataoka, K.,Sakurai, T.,Higuchi, Y. Multicopper Oxidase CueO mutant E506I TO BE PUBLISHED 0 0 0 0 3WKP C135A mutant of Geobacillus thermodenitrificans copper-containing nitrite reductase in complex with nitrite 2013-10-29 2013-12-11 Fukuda, Y.,Inoue, T. C135A mutant of Geobacillus thermodenitrificans copper-containing nitrite reductase in complex with nitrite to be published 0 0 0 0 3WA9 24311584 The nucleosome containing human H2A.Z.1 2013-04-30 2013-12-18 Horikoshi, N.,Sato, K.,Shimada, K.,Arimura, Y.,Osakabe, A.,Tachiwana, H.,Hayashi-Takanaka, Y.,Iwasaki, W.,Kagawa, W.,Harata, M.,Kimura, H.,Kurumizaka, H. Structural polymorphism in the L1 loop regions of human H2A.Z.1 and H2A.Z.2 Acta Crystallogr.,Sect.D 2013 69 2431 2439 3W7B 24108189 Crystal structure of formyltetrahydrofolate deformylase from Thermus thermophilus HB8 2013-02-28 2014-01-08 Sampei, G.,Kanagawa, M.,Baba, S.,Shimasaki, T.,Taka, H.,Mitsui, S.,Fujiwara, S.,Yanagida, Y.,Kusano, M.,Suzuki, S.,Terao, K.,Kawai, H.,Fukai, Y.,Nakagawa, N.,Ebihara, A.,Kuramitsu, S.,Yokoyama, S.,Kawai, G. Structures and reaction mechanisms of the two related enzymes, PurN and PurU J.Biochem. 2013 154 569 579 3WIW 24403065 Crystal structure of unsaturated glucuronyl hydrolase specific for heparin 2013-09-26 2014-01-08 Nakamichi, Y.,Mikami, B.,Murata, K.,Hashimoto, W. Crystal structure of a bacterial unsaturated glucuronyl hydrolase with specificity for heparin. J.Biol.Chem. 2014 289 4787 4797 3W43 26057679 Crystal structure of RsbX in complex with manganese in space group P21 2013-01-04 2014-01-22 Teh, A.H.,Makino, M.,Hoshino, T.,Baba, S.,Shimizu, N.,Yamamoto, M.,Kumasaka, T. Structure of the RsbX phosphatase involved in the general stress response of Bacillus subtilis Acta Crystallogr.,Sect.D 2015 71 1392 1399 3W44 26057679 Crystal structure of RsbX, selenomethionine derivative 2013-01-04 2014-01-22 Teh, A.H.,Makino, M.,Hoshino, T.,Baba, S.,Shimizu, N.,Yamamoto, M.,Kumasaka, T. Structure of the RsbX phosphatase involved in the general stress response of Bacillus subtilis Acta Crystallogr.,Sect.D 2015 71 1392 1399 4MMH 24437462 Crystal structure of heparan sulfate lyase HepC from Pedobacter heparinus 2013-09-09 2014-01-29 Hashimoto, W.,Maruyama, Y.,Nakamichi, Y.,Mikami, B.,Murata, K. Crystal Structure of Pedobacter heparinus Heparin Lyase Hep III with the Active Site in a Deep Cleft Biochemistry 2014 53 777 786 4MMI 24437462 Crystal structure of heparan sulfate lyase HepC mutant from Pedobacter heparinus 2013-09-09 2014-01-29 Hashimoto, W.,Maruyama, Y.,Nakamichi, Y.,Mikami, B.,Murata, K. Crystal Structure of Pedobacter heparinus Heparin Lyase Hep III with the Active Site in a Deep Cleft Biochemistry 2014 53 777 786 3WIR 24255995 Crystal structure of kojibiose phosphorylase complexed with glucose 2013-09-24 2014-02-05 Okada, S.,Yamamoto, T.,Watanabe, H.,Nishimoto, T.,Chaen, H.,Fukuda, S.,Wakagi, T.,Fushinobu, S. Structural and mutational analysis of substrate recognition in kojibiose phosphorylase Febs J. 2014 281 778 786 3W6A Crystal structure of cross-linked tetragonal hen egg white lysozyme soaked wiht 5mM [Ru(benzene)Cl2]2 2013-02-13 2014-02-19 Ueno, T.,Tabe, H.,Abe, S.,Hikage, T.,Kitagawa, S. Solid Artificial Metalloenzymes: Post-Engineering of Porous Protein Crystals by Organometallic Complexes To be Published 0 0 0 0 3WHQ 24531494 Crystal structure of gamma-glutamyltranspeptidase from Bacillus subtilis (crystal soaked for 0 min. in acivicin soln. ) 2013-08-30 2014-02-19 Ida, T.,Suzuki, H.,Fukuyama, K.,Hiratake, J.,Wada, K. Structure of Bacillus subtilis gamma-glutamyltranspeptidase in complex with acivicin: diversity of the binding mode of a classical and electrophilic active-site-directed glutamate analogue. Acta Crystallogr.,Sect.D 2014 70 607 614 3WHR 24531494 Crystal structure of gamma-glutamyltranspeptidase from Bacillus subtilis (crystal soaked for 3min. in acivicin soln. ) 2013-08-30 2014-02-19 Ida, T.,Suzuki, H.,Fukuyama, K.,Hiratake, J.,Wada, K. Structure of Bacillus subtilis gamma-glutamyltranspeptidase in complex with acivicin: diversity of the binding mode of a classical and electrophilic active-site-directed glutamate analogue. Acta Crystallogr.,Sect.D 2014 70 607 614 3WHS 24531494 Crystal structure of Bacillus subtilis gamma-glutamyltranspeptidase in complex with acivicin 2013-08-30 2014-02-19 Ida, T.,Suzuki, H.,Fukuyama, K.,Hiratake, J.,Wada, K. Structure of Bacillus subtilis gamma-glutamyltranspeptidase in complex with acivicin: diversity of the binding mode of a classical and electrophilic active-site-directed glutamate analogue. Acta Crystallogr.,Sect.D 2014 70 607 614 4J7V Crystal structure of cross-linked hen egg white lysozyme soaked with 5mM [Ru(benzene)Cl2]2 2013-02-14 2014-02-19 Ueno, T.,Tabe, H.,Abe, S.,Hikage, T.,Kitagawa, S. Solid Artificial Metalloenzymes: Post-Engineering of Porous Protein Crystals by Organometallic Complexes To be Published 0 0 0 0 3WNU 24598912 The crystal structure of catalase-peroxidase, KatG, from Synechococcus PCC7942 2013-12-17 2014-03-12 Kamachi, S.,Wada, K.,Tamoi, M.,Shigeoka, S.,Tada, T. The 2.2 angstrom resolution structure of the catalase-peroxidase KatG from Synechococcus elongatus PCC7942. Acta Crystallogr.,Sect.F 2014 70 288 293 4KIA 24598731 Crystal structure of LmHde, heme-degrading enzyme, from Listeria monocytogenes 2013-05-02 2014-03-12 Duong, T.,Park, K.,Kim, T.,Kang, S.W.,Hahn, M.J.,Hahn, M.J.,Hwang, H.Y.,Jang, I.,Oh, H.B.,Kim, K.K. Structural and functional characterization of an Isd-type haem-degradation enzyme from Listeria monocytogenes. Acta Crystallogr.,Sect.D 2014 70 615 626 3W8Q 34866601 Structure of the Human Mitogen-Activated Protein Kinase Kinase 1 (MEK1) 2013-03-20 2014-03-26 Nakae, S.,Kitamura, M.,Fujiwara, D.,Sawa, M.,Shirai, T.,Fujii, I.,Tada, T. Structure of mitogen-activated protein kinase kinase 1 in the DFG-out conformation. Acta Crystallogr.,Sect.F 2021 77 459 464 4JR8 25268964 Crystal structure of cruxrhodopsin-3 from Haloarcula vallismortis at 2.3 angstrom resolution 2013-03-21 2014-03-26 Chan, S.K.,Kitajima-Ihara, T.,Fujii, R.,Gotoh, T.,Murakami, M.,Ihara, K.,Kouyama, T. Crystal structure of Cruxrhodopsin-3 from Haloarcula vallismortis Plos One 2014 9 0 0 4NBA 24584240 Carbazole-bound oxygenase with Ile262 replaced by Val and ferredoxin complex of carbazole 1,9a-dioxygenase 2013-10-23 2014-03-26 Inoue, K.,Usami, Y.,Ashikawa, Y.,Noguchi, H.,Umeda, T.,Yamagami-Ashikawa, A.,Horisaki, T.,Uchimura, H.,Terada, T.,Nakamura, S.,Shimizu, K.,Habe, H.,Yamane, H.,Fujimoto, Z.,Nojiri, H. Structural basis of the divergent oxygenation reactions catalyzed by the rieske nonheme iron oxygenase carbazole 1,9a-dioxygenase. Appl.Environ.Microbiol. 2014 80 2821 2832 4KEP 24699732 Crystal structure of 4-pyridoxolactonase, wild-type 2013-04-26 2014-04-09 Kobayashi, J.,Yoshikane, Y.,Yagi, T.,Baba, S.,Mizutani, K.,Takahashi, N.,Mikami, B. Structure of 4-pyridoxolactonase from Mesorhizobium loti. Acta Crystallogr.,Sect.F 2014 70 424 432 3WKW 24680821 Crystal structure of GH127 beta-L-arabinofuranosidase HypBA1 from Bifidobacterium longum ligand free form 2013-11-01 2014-04-30 Ito, T.,Saikawa, K.,Kim, S.,Fujita, K.,Ishiwata, A.,Kaeothip, S.,Arakawa, T.,Wakagi, T.,Beckham, G.T.,Ito, Y.,Fushinobu, S. Crystal structure of glycoside hydrolase family 127 beta-l-arabinofuranosidase from Bifidobacterium longum. Biochem.Biophys.Res.Commun. 2014 447 32 37 3WE7 24702737 Crystal Structure of Diacetylchitobiose Deacetylase from Pyrococcus horikoshii 2013-07-01 2014-05-07 Mine, S.,Niiyama, M.,Hashimoto, W.,Ikegami, T.,Koma, D.,Ohmoto, T.,Fukuda, Y.,Inoue, T.,Abe, Y.,Ueda, T.,Morita, J.,Uegaki, K.,Nakamura, T. Expression from engineered Escherichia coli chromosome and crystallographic study of archaeal N,N'-diacetylchitobiose deacetylase Febs J. 2014 281 2584 2596 3WL4 24702737 N,N'-diacetylchitobiose deacetylase (Se-derivative) from Pyrococcus furiosus 2013-11-07 2014-05-07 Mine, S.,Niiyama, M.,Hashimoto, W.,Ikegami, T.,Koma, D.,Ohmoto, T.,Fukuda, Y.,Inoue, T.,Abe, Y.,Ueda, T.,Morita, J.,Uegaki, K.,Nakamura, T. Expression from engineered Escherichia coli chromosome and crystallographic study of archaeal N,N'-diacetylchitobiose deacetylase Febs J. 2014 281 2584 2596 3WBO 24121329 Crystal Structure Analysis of the Z-DNA hexamer CGCGCG with 40 mM NaCl 2013-05-20 2014-05-14 Chatake, T. Structural fluctuation observed in Z-DNA d(CGCGCG)2 in the absence of divalent metal cations and polyamines J.SYNCHROTRON RADIAT. 2013 20 864 868 3WUX Crystal structure of unsaturated glucuronyl hydrolase mutant D115N/K370S from Streptococcus agalactiae 2014-05-08 2014-05-28 Nakamichi, Y.,Oiki, S.,Mikami, B.,Murata, K.,Hashimoto, W. Crystal structure of unsaturated glucuronyl hydrolase mutant D115N/K370S from Streptococcus agalactiae to be published 0 0 0 0 4L35 25268964 Crystal structure of cruxrhodopsin-3 at pH5 from Haloarcula vallismortis at 2.1 angstrom resolution 2013-06-05 2014-06-11 Chan, S.K.,Kitajima-Ihara, T.,Fujii, R.,Gotoh, T.,Murakami, M.,Ihara, K.,Kouyama, T. Crystal structure of Cruxrhodopsin-3 from Haloarcula vallismortis Plos One 2014 9 0 0 4TKL 25288804 Crystal structure of NADH-dependent reductase A1-R' responsible for alginate metabolism 2014-05-27 2014-06-25 Takase, R.,Mikami, B.,Kawai, S.,Murata, K.,Hashimoto, W. Structure-based Conversion of the Coenzyme Requirement of a Short-chain Dehydrogenase/Reductase Involved in Bacterial Alginate Metabolism. J.Biol.Chem. 2014 289 33198 33214 4TKM 25288804 Crystal structure of NADH-dependent reductase A1-R' complexed with NAD 2014-05-27 2014-06-25 Takase, R.,Mikami, B.,Kawai, S.,Murata, K.,Hashimoto, W. Structure-based Conversion of the Coenzyme Requirement of a Short-chain Dehydrogenase/Reductase Involved in Bacterial Alginate Metabolism. J.Biol.Chem. 2014 289 33198 33214 3WUI 24981551 Dimeric horse cytochrome c formed by refolding from molten globule state 2014-04-25 2014-07-16 Deshpande, M.S.,Parui, P.P.,Kamikubo, H.,Yamanaka, M.,Nagao, S.,Komori, H.,Kataoka, M.,Higuchi, Y.,Hirota, S. Formation of domain-swapped oligomer of cytochrome C from its molten globule state oligomer. Biochemistry 2014 53 4696 4703 3WI9 24440558 Crystal structure of copper nitrite reductase from Geobacillus kaustophilus 2013-09-09 2014-07-23 Fukuda, Y.,Koteishi, H.,Yoneda, R.,Tamada, T.,Takami, H.,Inoue, T.,Nojiri, M. Structural and functional characterization of the Geobacillus copper nitrite reductase: involvement of the unique N-terminal region in the interprotein electron transfer with its redox partner Biochim.Biophys.Acta 2014 1837 396 405 3WF9 25078151 Crystal structure of S6K1 kinase domain in complex with a quinoline derivative 1-oxo-1-[(4-sulfamoylphenyl)amino]propan-2-yl-2-methyl-1,2,3,4-tetrahydroacridine-9-carboxylate 2013-07-17 2014-08-06 Niwa, H.,Mikuni, J.,Sasaki, S.,Tomabechi, Y.,Honda, K.,Ikeda, M.,Ohsawa, N.,Wakiyama, M.,Handa, N.,Shirouzu, M.,Honma, T.,Tanaka, A.,Yokoyama, S. Crystal structures of the S6K1 kinase domain in complexes with inhibitors J.Struct.Funct.Genom. 2014 15 153 164 3WRW 25092327 Crystal structure of the N-terminal domain of resistance protein 2014-02-27 2014-08-13 Ishibashi, K.,Kezuka, Y.,Kobayashi, C.,Kato, M.,Inoue, T.,Nonaka, T.,Ishikawa, M.,Matsumura, H.,Katoh, E. Structural basis for the recognition-evasion arms race between Tomato mosaic virus and the resistance gene Tm-1 Proc.Natl.Acad.Sci.USA 2014 111 0 0 3WRX 25092327 Crystal structure of helicase complex 1 2014-02-27 2014-08-13 Ishibashi, K.,Kezuka, Y.,Kobayashi, C.,Kato, M.,Inoue, T.,Nonaka, T.,Ishikawa, M.,Matsumura, H.,Katoh, E. Structural basis for the recognition-evasion arms race between Tomato mosaic virus and the resistance gene Tm-1 Proc.Natl.Acad.Sci.USA 2014 111 0 0 4TKZ Crystal structure of phosphotransferase system component EIIA from Streptococcus agalactiae 2014-05-28 2014-08-20 Nakamichi, Y.,Maruyama, Y.,Oiki, S.,Mikami, B.,Murata, K.,Hashimoto, W. Crystal structure of phosphotransferase system component EIIA from Streptococcus agalactiae To Be Published 0 0 0 0 4MEC 25496210 Crystal structure of RAT Heme oxygenase-1 in complex with ZN(II)-Protoporphyrin IX 2013-08-26 2014-08-27 Harada, E.,Sugishima, M.,Harada, J.,Fukuyama, K.,Sugase, K. Distal regulation of heme binding of heme oxygenase-1 mediated by conformational fluctuations Biochemistry 2015 54 340 348 4TOQ 25252615 Crystal structure of class III chitinase from pomegranate provides the insight into its metal storage capacity 2014-06-06 2014-09-10 Masuda, T.,Zhao, G.,Mikami, B. Crystal structure of class III chitinase from pomegranate provides the insight into its metal storage capacity. Biosci.Biotechnol.Biochem. 2015 79 45 50 3WX9 Crystal structure of Pyrococcus horikoshii kynurenine aminotransferase in complex with PMP, GLA, 4AD, 2OG, GLU and KYA 2014-07-28 2014-09-24 Okada, K.,Angkawidjaja, C.,Koga, Y.,Kanaya, S. Crystal structure of Pyrococcus horikoshii kynurenine aminotransferase in complex with PMP, GLA, 4AD, 2OG, GLU and KYA To be Published 0 0 0 0 4W7H 25288804 Crystal Structure of DEH Reductase A1-R Mutant 2014-08-22 2014-09-24 Takase, R.,Mikami, B.,Kawai, S.,Murata, K.,Hashimoto, W. Structure-based Conversion of the Coenzyme Requirement of a Short-chain Dehydrogenase/Reductase Involved in Bacterial Alginate Metabolism. J.Biol.Chem. 2014 289 33198 33214 4W7I 25288804 Crystal structure of DEH reductase A1-R' mutant 2014-08-22 2014-09-24 Takase, R.,Mikami, B.,Kawai, S.,Murata, K.,Hashimoto, W. Structure-based Conversion of the Coenzyme Requirement of a Short-chain Dehydrogenase/Reductase Involved in Bacterial Alginate Metabolism. J.Biol.Chem. 2014 289 33198 33214 3WQJ 25286853 Crystal structure of archaerhodopsin-2 at 1.8 angstrom resolution 2014-01-27 2014-10-15 Kouyama, T.,Fujii, R.,Kanada, S.,Nakanishi, T.,Chan, S.K.,Murakami, M. Structure of archaerhodopsin-2 at 1.8 angstrom resolution. Acta Crystallogr.,Sect.D 2014 70 2692 2701 3WMH Human PPAR gamma ligand binding domain in complex with a gammma selective synthetic partial agonist MEKT75 2013-11-19 2014-11-19 Oyama, T.,Ohashi, M.,Miyachi, H.,Kusunoki, M. Human PPRR gamma ligand binding domain in complex with a gammma selective synthetic partial agonist MEKT75 TO BE PUBLISHED 0 0 0 0 3WYO 25370865 Heterodimeric myoglobin formed by domain swapping 2014-09-04 2014-11-19 Lin, Y.W.,Nagao, S.,Zhang, M.,Shomura, Y.,Higuchi, Y.,Hirota, S. Rational design of heterodimeric protein using domain swapping for myoglobin. Angew.Chem.Int.Ed.Engl. 2015 54 511 515 3WNI 1.50 A resolution crystal structure of dioxygen bound copper-containing nitrite reductase from Geobacillus thermodenitrificans 2013-12-10 2014-12-10 Fukuda, Y.,Inoue, T. 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Febs J. 2014 281 5092 5103 3X16 25479089 Crystal structure of the catalase-peroxidase KatG W78F mutant from Synechococcus elongatus PCC7942 2014-10-30 2014-12-24 Kamachi, S.,Hirabayashi, K.,Tamoi, M.,Shigeoka, S.,Tada, T.,Wada, K. Crystal structure of the catalase-peroxidase KatG W78F mutant from Synechococcus elongatus PCC7942 in complex with the antitubercular pro-drug isoniazid. Febs Lett. 2015 589 131 137 4U8F 25605731 Crystal structure of 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase complexed with a tartrate 2014-08-03 2014-12-24 Maruyama, Y.,Oiki, S.,Takase, R.,Mikami, B.,Murata, K.,Hashimoto, W. Metabolic Fate of Unsaturated Glucuronic/Iduronic Acids from Glycosaminoglycans: MOLECULAR IDENTIFICATION AND STRUCTURE DETERMINATION OF STREPTOCOCCAL ISOMERASE AND DEHYDROGENASE. 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Preparation of a Cross-Linked Porous Protein Crystal Containing Ru Carbonyl Complexes as a CO-Releasing Extracellular Scaffold Inorg.Chem. 2015 54 215 220 4W96 25494847 Crystal structure of cross-linked tetragonal hen egg white lysozyme soaked with 5mM [Ru(CO)3Cl2]2 followed by the reaction in deoxy-myoglobin solution 2014-08-27 2014-12-31 Tabe, H.,Fujita, K.,Abe, S.,Tsujimoto, M.,Kuchimaru, T.,Kizaka-Kondoh, S.,Takano, M.,Kitagawa, S.,Ueno, T. Preparation of a Cross-Linked Porous Protein Crystal Containing Ru Carbonyl Complexes as a CO-Releasing Extracellular Scaffold Inorg.Chem. 2015 54 215 220 3WXO 25303560 Crystal structure of isoniazid bound KatG catalase peroxidase from Synechococcus elongatus PCC7942 2014-08-04 2015-01-21 Kamachi, S.,Hirabayashi, K.,Tamoi, M.,Shigeoka, S.,Tada, T.,Wada, K. The crystal structure of isoniazid-bound KatG catalase-peroxidase from Synechococcus elongatus PCC7942. 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Molecular Mechanism for Conformational Dynamics of Ras-GTP Elucidated from In-Situ Structural Transition in Crystal Sci Rep 2016 6 25931 25931 5AX7 27194449 yeast pyruvyltransferase Pvg1p 2015-07-16 2016-06-08 Higuchi, Y.,Yoshinaga, S.,Yoritsune, K.,Tateno, H.,Hirabayashi, J.,Nakakita, S.,Kanekiyo, M.,Kakuta, Y.,Takegawa, K. A rationally engineered yeast pyruvyltransferase Pvg1p introduces sialylation-like properties in neo-human-type complex oligosaccharide Sci Rep 2016 6 26349 26349 5E71 27325738 Crystal structure of the archaeal tRNA m2G/m22G10 methyltransferase (aTrm11) from Thermococcus kodakarensis 2015-10-11 2016-07-06 Hirata, A.,Nishiyama, S.,Tamura, T.,Yamauchi, A.,Hori, H. Structural and functional analyses of the archaeal tRNA m2G/m22G10 methyltransferase aTrm11 provide mechanistic insights into site specificity of a tRNA methyltransferase that contains common RNA-binding modules. Nucleic Acids Res. 2016 0 0 0 5E72 27325738 Crystal structure of the archaeal tRNA m2G/m22G10 methyltransferase (aTrm11) in complex with S-adenosyl-L-methionine (SAM) from Thermococcus kodakarensis 2015-10-11 2016-07-06 Hirata, A.,Nishiyama, S.,Tamura, T.,Yamauchi, A.,Hori, H. Structural and functional analyses of the archaeal tRNA m2G/m22G10 methyltransferase aTrm11 provide mechanistic insights into site specificity of a tRNA methyltransferase that contains common RNA-binding modules. Nucleic Acids Res. 2016 0 0 0 5B42 27369079 Crystal structure of the C-terminal endonuclease domain of Aquifex aeolicus MutL. 2016-03-30 2016-07-13 Fukui, K.,Baba, S.,Kumasaka, T.,Yano, T. Structural Features and Functional Dependency on beta-Clamp Define Distinct Subfamilies of Bacterial Mismatch Repair Endonuclease MutL J.Biol.Chem. 2016 291 16990 17000 5HNC 27377379 Synchrotron X-ray single crystal diffraction from protein microcrystals via magnetically oriented microcrystal arrays in gels 2016-01-18 2016-07-20 Tsukui, S.,Kimura, F.,Kusaka, K.,Baba, S.,Mizuno, N.,Kimura, T. Neutron and X-ray single-crystal diffraction from protein microcrystals via magnetically oriented microcrystal arrays in gels. Acta Crystallogr D Struct Biol 2016 72 823 829 5B0W 27352034 Crystal structure of the 11-cis isomer of pharaonis halorhodopsin in the absence of halide ions 2015-11-11 2016-07-27 Chan, S.K.,Kawaguchi, H.,Kubo, H.,Murakami, M.,Ihara, K.,Maki, K.,Kouyama, T. Crystal Structure of the 11-cis Isomer of Pharaonis Halorhodopsin: Structural Constraints on Interconversions among Different Isomeric States Biochemistry 2016 55 4092 4104 5ETZ 27352034 Structure of the all-trans isomer of pharaonis halorhodopsin in the absence of halide ions 2015-11-18 2016-07-27 Chan, S.K.,Kawaguchi, H.,Kubo, H.,Murakami, M.,Ihara, K.,Maki, K.,Kouyama, T. Crystal Structure of the 11-cis Isomer of Pharaonis Halorhodopsin: Structural Constraints on Interconversions among Different Isomeric States Biochemistry 2016 55 4092 4104 5B2F 27456364 N,N'-diacetylchitobiose deacetylase from Pyrococcus horikoshii complexed with its inhibitor MPG (phosphate-containing condition) 2016-01-15 2016-08-10 Nakamura, T.,Yonezawa, Y.,Tsuchiya, Y.,Niiyama, M.,Ida, K.,Oshima, M.,Morita, J.,Uegaki, K. Substrate recognition of N,N'-diacetylchitobiose deacetylase from Pyrococcus horikoshii J.Struct.Biol. 2016 195 286 293 5E4P X-ray Crystal Structure Analysis of Magnetically Oriented Microcrystals of Lysozyme at 1.8 angstrom Resolution 2015-10-06 2016-08-31 Tsukui, S.,Kimura, F.,Garman, E.F.,Baba, S.,Mizuno, N.,Mikami, B.,Kimura, T. X-ray crystal structure analysis of magnetically oriented microcrystals of lysozyme at 1.8 A resolution J.Appl.Crystallogr. 2016 49 457 461 5B5T 27622749 Crystal Structure of Escherichia coli Gamma-Glutamyltranspeptidase in Complex with peptidyl phosphonate inhibitor 1b 2016-05-18 2016-09-28 Kamiyama, A.,Nakajima, M.,Han, L.,Wada, K.,Mizutani, M.,Tabuchi, Y.,Kojima-Yuasa, A.,Matsui-Yuasa, I.,Suzuki, H.,Fukuyama, K.,Watanabe, B.,Hiratake, J. Phosphonate-based irreversible inhibitors of human gamma-glutamyl transpeptidase (GGT). GGsTop is a non-toxic and highly selective inhibitor with critical electrostatic interaction with an active-site residue Lys562 for enhanced inhibitory activity Bioorg.Med.Chem. 2016 24 5340 5352 5GHT 27599844 DNA replication protein 2016-06-20 2016-10-12 Oyama, T.,Ishino, S.,Shirai, T.,Yamagami, T.,Nagata, M.,Ogino, H.,Kusunoki, M.,Ishino, Y. Atomic structure of an archaeal GAN suggests its dual roles as an exonuclease in DNA repair and a CMG component in DNA replication. Nucleic Acids Res. 2016 44 9505 9517 5B7E 27710945 Structure of perdeuterated CueO 2016-06-07 2016-10-19 Akter, M.,Inoue, C.,Komori, H.,Matsuda, N.,Sakurai, T.,Kataoka, K.,Higuchi, Y.,Shibata, N. Biochemical, spectroscopic and X-ray structural analysis of deuterated multicopper oxidase CueO prepared from a new expression construct for neutron crystallography Acta Crystallogr.,Sect.F 2016 72 788 794 5GKE 27773688 Structure of EndoMS-dsDNA1 complex 2016-07-04 2016-11-02 Nakae, S.,Hijikata, A.,Tsuji, T.,Yonezawa, K.,Kouyama, K.I.,Mayanagi, K.,Ishino, S.,Ishino, Y.,Shirai, T. Structure of the EndoMS-DNA Complex as Mismatch Restriction Endonuclease Structure 2016 24 1960 1971 5GKI 27773688 Structure of EndoMS-dsDNA3 complex 2016-07-04 2016-11-02 Nakae, S.,Hijikata, A.,Tsuji, T.,Yonezawa, K.,Kouyama, K.I.,Mayanagi, K.,Ishino, S.,Ishino, Y.,Shirai, T. Structure of the EndoMS-DNA Complex as Mismatch Restriction Endonuclease Structure 2016 24 1960 1971 5B1H 28127810 Crystal structure of cystathionine beta-synthase from Lactobacillus plantarum 2015-12-04 2016-12-07 Matoba, Y.,Yoshida, T.,Izuhara-Kihara, H.,Noda, M.,Sugiyama, M. Crystallographic and mutational analyses of cystathionine beta-synthase in the H2 S-synthetic gene cluster in Lactobacillus plantarum Protein Sci. 2017 26 763 783 5B1I 28127810 Crystal structure of K42A mutant of cystathionine beta-synthase from Lactobacillus plantarum in a complex with L-methionine 2015-12-04 2016-12-07 Matoba, Y.,Yoshida, T.,Izuhara-Kihara, H.,Noda, M.,Sugiyama, M. Crystallographic and mutational analyses of cystathionine beta-synthase in the H2 S-synthetic gene cluster in Lactobacillus plantarum Protein Sci. 2017 26 763 783 5B27 The 1.02A structure of human FABP3 M20S mutant complexed with palmitic acid 2016-01-12 2017-01-18 Matsuoka, D.,Sugiyama, S.,Kakinouchi, K.,Niiyama, M.,Murata, M.,Matsuoka, S. The 1.02A structure of human FABP3 M20S mutant complexed with palmitic acid. To Be Published 0 0 0 0 5B29 The 1.28A structure of human FABP3 F16V mutant complexed with palmitic acid at room temperature 2016-01-12 2017-01-18 Matsuoka, D.,Sugiyama, S.,Kakinouchi, K.,Niiyama, M.,Murata, M.,Matsuoka, S. The 1.28A structure of human FABP3 F16V mutant complexed with palmitic acid at room temperature. To Be Published 0 0 0 0 5B5E 28102667 Crystal structure analysis of Photosystem II complex 2016-05-02 2017-02-01 Tanaka, A.,Fukushima, Y.,Kamiya, N. Two Different Structures of the Oxygen-Evolving Complex in the Same Polypeptide Frameworks of Photosystem II J. Am. Chem. Soc. 2017 139 1718 1721 5GYR 27883268 Tetrameric Allochromatium vinosum cytochrome c' 2016-09-23 2017-02-08 Yamanaka, M.,Hoshizumi, M.,Nagao, S.,Nakayama, R.,Shibata, N.,Higuchi, Y.,Hirota, S. Formation and carbon monoxide-dependent dissociation of Allochromatium vinosum cytochrome c' oligomers using domain-swapped dimers Protein Sci. 2017 26 464 474 3W4S 23737529 Myo-inositol kinase from Thermococcus kodakarensis 2013-01-10 2017-02-22 Sato, T.,Fujihashi, M.,Miyamoto, Y.,Kuwata, K.,Kusaka, E.,Fujita, H.,Miki, K.,Atomi, H. An uncharacterized member of the ribokinase family in Thermococcus kodakarensis exhibits myo-inositol kinase activity. J.Biol.Chem. 2013 288 20856 20867 5B5G 27905160 Crystal structure of ALiS4-Streptavidin complex 2016-05-04 2017-03-01 Tachibana, R.,Terai, T.,Boncompain, G.,Sugiyama, S.,Saito, N.,Perez, F.,Urano, Y. Improving the Solubility of Artificial Ligands of Streptavidin to Enable More Practical Reversible Switching of Protein Localization in Cells Chembiochem 2017 18 358 362 5B4H 27596987 Crystal structure of I86D mutant of phycocyanobilin:ferredoxin oxidoreductase in complex with biliverdin (data 1) 2016-04-04 2017-03-15 Hagiwara, Y.,Wada, K.,Irikawa, T.,Sato, H.,Unno, M.,Yamamoto, K.,Fukuyama, K.,Sugishima, M. Atomic-resolution structure of the phycocyanobilin:ferredoxin oxidoreductase I86D mutant in complex with fully protonated biliverdin FEBS Lett. 2016 590 3425 3434 5B4I 27596987 Crystal structure of I86D mutant of phycocyanobilin:ferredoxin oxidoreductase in complex with biliverdin (data 2) 2016-04-04 2017-03-15 Hagiwara, Y.,Wada, K.,Irikawa, T.,Sato, H.,Unno, M.,Yamamoto, K.,Fukuyama, K.,Sugishima, M. Atomic-resolution structure of the phycocyanobilin:ferredoxin oxidoreductase I86D mutant in complex with fully protonated biliverdin FEBS Lett. 2016 590 3425 3434 5H2F 28272640 Crystal structure of the PsbM-deletion mutant of photosystem II 2016-10-15 2017-03-22 Uto, S.,Kawakami, K.,Umena, Y.,Iwai, M.,Ikeuchi, M.,Shen, J.R.,Kamiya, N. Mutual relationships between structural and functional changes in a PsbM-deletion mutant of photosystem II. Faraday Discuss. 2017 198 107 120 5GU0 28300064 Crystal structure of Au.CL-apo-E45C/R52C-rHLFr 2016-08-24 2017-03-29 Maity, B.,Abe, S.,Ueno, T. Observation of gold sub-nanocluster nucleation within a crystalline protein cage Nat Commun 2017 8 14820 14820 5GU3 28300064 Crystal structure of Au(E).CL-apo-E45C/R52C-rHLFr 2016-08-24 2017-03-29 Maity, B.,Abe, S.,Ueno, T. Observation of gold sub-nanocluster nucleation within a crystalline protein cage Nat Commun 2017 8 14820 14820 5X0B 28358477 Free serine kinase in complex with AMP 2017-01-20 2017-04-12 Nagata, R.,Fujihashi, M.,Kawamura, H.,Sato, T.,Fujita, T.,Atomi, H.,Miki, K. Structural Study on the Reaction Mechanism of a Free Serine Kinase Involved in Cysteine Biosynthesis ACS Chem. Biol. 2017 12 1514 1523 5X0K 28358477 Free serine kinase (E30Q mutant) in complex with AMP 2017-01-20 2017-04-12 Nagata, R.,Fujihashi, M.,Kawamura, H.,Sato, T.,Fujita, T.,Atomi, H.,Miki, K. Structural Study on the Reaction Mechanism of a Free Serine Kinase Involved in Cysteine Biosynthesis ACS Chem. Biol. 2017 12 1514 1523 5H45 28432121 Crystal structure of the C-terminal Lon protease-like domain of Thermus thermophilus RadA/Sms 2016-10-30 2017-05-03 Inoue, M.,Fukui, K.,Fujii, Y.,Nakagawa, N.,Yano, T.,Kuramitsu, S.,Masui, R. The Lon protease-like domain in the bacterial RecA paralog RadA is required for DNA binding and repair. J. Biol. Chem. 2017 292 9801 9814 5WY5 20864041 Crystal structure of MAGEG1 and NSE1 complex 2017-01-11 2017-05-03 Doyle, J.M.,Gao, J.,Wang, J.,Yang, M.,Potts, P.R. Mage-Ring Protein Complexes Comprise A Family Of E3 Ubiquitin Ligases. Mol.Cell 2010 39 963 974 5H0W 28563699 Crystal structure of H88F mutated human transthyretin 2016-10-07 2017-06-14 Yokoyama, T.,Hanawa, Y.,Obita, T.,Mizuguchi, M. Stability and crystal structures of His88 mutant human transthyretins FEBS Lett. 2017 591 1862 1871 5H0X 28563699 Crystal structure of H88S mutated human transthyretin 2016-10-07 2017-06-14 Yokoyama, T.,Hanawa, Y.,Obita, T.,Mizuguchi, M. Stability and crystal structures of His88 mutant human transthyretins FEBS Lett. 2017 591 1862 1871 5H0Y 28563699 Crystal structure of H88Y mutated human transthyretin 2016-10-07 2017-06-14 Yokoyama, T.,Hanawa, Y.,Obita, T.,Mizuguchi, M. Stability and crystal structures of His88 mutant human transthyretins FEBS Lett. 2017 591 1862 1871 5B5J 27422088 Hen egg white lysozyme with boron tracedrug UTX-97 2016-05-11 2017-06-28 Morimoto, Y.,Nagasawa, H.,Uto, Y.,Chatake, T.,Hori, H. Structural Insight Into Protein Binding of Boron Tracedrug UTX-97 Revealed by the Co-Crystal Structure With Lysozyme at 1.26 angstrom Resolution. J Pharm Sci 2016 105 2298 2301 5XE8 28642545 Crystal Structure of the Peptidase Domain of Streptococcus mutans ComA 2017-04-03 2017-06-28 Ishii, S.,Fukui, K.,Yokoshima, S.,Kumagai, K.,Beniyama, Y.,Kodama, T.,Fukuyama, T.,Okabe, T.,Nagano, T.,Kojima, H.,Yano, T. High-throughput Screening of Small Molecule Inhibitors of the Streptococcus Quorum-sensing Signal Pathway Sci Rep 2017 7 4029 4029 5XE9 28642545 Crystal Structure of the Complex of the Peptidase Domain of Streptococcus mutans ComA with a Small Molecule Inhibitor. 2017-04-03 2017-06-28 Ishii, S.,Fukui, K.,Yokoshima, S.,Kumagai, K.,Beniyama, Y.,Kodama, T.,Fukuyama, T.,Okabe, T.,Nagano, T.,Kojima, H.,Yano, T. High-throughput Screening of Small Molecule Inhibitors of the Streptococcus Quorum-sensing Signal Pathway Sci Rep 2017 7 4029 4029 5GX7 28432302 Crystal structure of solute-binding protein complexed with unsaturated chondroitin disaccharide with a sulfate group at C-6 position of GalNAc 2016-09-15 2017-07-19 Oiki, S.,Mikami, B.,Maruyama, Y.,Murata, K.,Hashimoto, W. A bacterial ABC transporter enables import of mammalian host glycosaminoglycans Sci Rep 2017 7 1069 1069 5GX8 28432302 Crystal structure of solute-binding protein related to glycosaminoglycans 2016-09-15 2017-07-19 Oiki, S.,Mikami, B.,Maruyama, Y.,Murata, K.,Hashimoto, W. A bacterial ABC transporter enables import of mammalian host glycosaminoglycans Sci Rep 2017 7 1069 1069 5GNP Crystal structure of a Z-ring associated protein from Salmonella typhimurium 2016-07-22 2017-07-26 Choi, H.,Yoon, H.J.,Lee, H.H. Crystal structure of a Z-ring associated protein from Salmonella typhimurium To Be Published 0 0 0 0 5GX6 28432302 Crystal structure of solute-binding protein complexed with unsaturated chondroitin disaccharide with a sulfate group at C-4 position of GalNAc 2016-09-15 2017-07-26 Oiki, S.,Mikami, B.,Maruyama, Y.,Murata, K.,Hashimoto, W. A bacterial ABC transporter enables import of mammalian host glycosaminoglycans Sci Rep 2017 7 1069 1069 5WX8 28794035 Human herpesvirus 6A immediate early protein 2 C-terminal domain 2017-01-06 2017-08-02 Nishimura, M.,Wang, J.,Wakata, A.,Sakamoto, K.,Mori, Y. Crystal Structure of the DNA-Binding Domain of Human Herpesvirus 6A Immediate Early Protein 2. J. Virol. 2017 91 0 0 5XP1 28736891 Structure of monomeric mutant of REI immunoglobulin light chain variable domain crystallized at pH 6 2017-05-31 2017-08-02 Nawata, M.,Tsutsumi, H.,Kobayashi, Y.,Unzai, S.,Mine, S.,Nakamura, T.,Uegaki, K.,Kamikubo, H.,Kataoka, M.,Hamada, D. Heat-induced native dimerization prevents amyloid formation by variable domain from immunoglobulin light-chain REI FEBS J. 2017 284 3114 3127 5GQP Thaumatin Structure at pH 8.0, orthorhombic type1 2016-08-08 2017-08-09 Masuda, T.,Sano, A.,Murata, K.,Okubo, K.,Suzuki, M.,Mikami, B. Thaumatin Structure at pH 8.0, orthorhombic type1 To Be Published 0 0 0 0 5XEC 28660650 Heterodimer constructed from PA cyt c551-HT cyt c552 and HT cyt c552-PA cyt c551 chimeric proteins 2017-04-04 2017-08-09 Zhang, M.,Nakanishi, T.,Yamanaka, M.,Nagao, S.,Yanagisawa, S.,Shomura, Y.,Shibata, N.,Ogura, T.,Higuchi, Y.,Hirota, S. Rational Design of Domain-Swapping-Based c-Type Cytochrome Heterodimers by Using Chimeric Proteins. Chembiochem 2017 18 1712 1715 5X9S 28730604 Crystal structure of fully modified H-Ras-GppNHp 2017-03-09 2017-08-30 Ke, H.,Matsumoto, S.,Murashima, Y.,Taniguchi-Tamura, H.,Miyamoto, R.,Yoshikawa, Y.,Tsuda, C.,Kumasaka, T.,Mizohata, E.,Edamatsu, H.,Kataoka, T. Structural basis for intramolecular interaction of post-translationally modified H-RasGTP prepared by protein ligation FEBS Lett. 2017 591 2470 2481 5X9Y 28668638 Crystal structure of the ATPase domain from bacterial mismatch repair endonuclease Aquifex aeolicus MutL. 2017-03-10 2017-08-30 Fukui, K.,Iino, H.,Baba, S.,Kumasaka, T.,Kuramitsu, S.,Yano, T. Crystal structure and DNA-binding property of the ATPase domain of bacterial mismatch repair endonuclease MutL from Aquifex aeolicus Biochim. Biophys. Acta 2017 1865 1178 1187 5WRJ 28821720 Crystal structure of human tyrosylprotein sulfotransferase-1 complexed with PAP and gastrin peptide 2016-12-02 2017-09-06 Tanaka, S.,Nishiyori, T.,Kojo, H.,Otsubo, R.,Tsuruta, M.,Kurogi, K.,Liu, M.C.,Suiko, M.,Sakakibara, Y.,Kakuta, Y. Structural basis for the broad substrate specificity of the human tyrosylprotein sulfotransferase-1. 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Binding mode of metal ions to the bacterial iron import protein EfeO Biochem. Biophys. Res. Commun. 2017 493 1095 1101 5H54 29279306 Mdm12 from K. lactis 1-239 2016-11-04 2017-11-08 Kawano, S.,Tamura, Y.,Kojima, R.,Bala, S.,Asai, E.,Michel, A.H.,Kornmann, B.,Riezman, I.,Riezman, H.,Sakae, Y.,Okamoto, Y.,Endo, T. Structure-function insights into direct lipid transfer between membranes by Mmm1-Mdm12 of ERMES J. Cell Biol. 2018 217 959 974 5H55 29279306 Mdm12 from K. lactis 2016-11-04 2017-11-08 Kawano, S.,Tamura, Y.,Kojima, R.,Bala, S.,Asai, E.,Michel, A.H.,Kornmann, B.,Riezman, I.,Riezman, H.,Sakae, Y.,Okamoto, Y.,Endo, T. Structure-function insights into direct lipid transfer between membranes by Mmm1-Mdm12 of ERMES J. Cell Biol. 2018 217 959 974 5H5A 29279306 Mdm12 from K. lactis (1-239), Lys residues are uniformly dimethyl modified 2016-11-04 2017-11-08 Kawano, S.,Tamura, Y.,Kojima, R.,Bala, S.,Asai, E.,Michel, A.H.,Kornmann, B.,Riezman, I.,Riezman, H.,Sakae, Y.,Okamoto, Y.,Endo, T. Structure-function insights into direct lipid transfer between membranes by Mmm1-Mdm12 of ERMES J. Cell Biol. 2018 217 959 974 5WQV 30659961 Crystal structure of PriB mutant - S55A 2016-11-28 2017-11-29 Fujiyama, S.,Abe, Y.,Shiroishi, M.,Ikeda, Y.,Ueda, T. Insight into the interaction between PriB and DnaT on bacterial DNA replication restart: Significance of the residues on PriB dimer interface and highly acidic region on DnaT. Biochim Biophys Acta Proteins 2019 1867 367 375 5WT4 31587510 L-Cysteine-PLP intermediate of NifS from Helicobacter pylori 2016-12-09 2017-12-13 Nakamura, R.,Hikita, M.,Ogawa, S.,Takahashi, Y.,Fujishiro, T. Snapshots of PLP-substrate and PLP-product external aldimines as intermediates in two types of cysteine desulfurase enzymes. Febs J. 2019 0 0 0 5Y6Q 29319807 Crystal structure of an aldehyde oxidase from Methylobacillus sp. KY4400 2017-08-13 2018-01-24 Uchida, H.,Mikami, B.,Yamane-Tanabe, A.,Ito, A.,Hirano, K.,Oki, M. Crystal structure of an aldehyde oxidase from Methylobacillus sp. KY4400. J. Biochem. 2018 163 321 328 5XBQ 28992240 Peroxiredoxin from Pyrococcus horikoshii (6m mutant) 2017-03-21 2018-01-31 Nakamura, T.,Oshima, M.,Yasuda, M.,Shimamura, A.,Morita, J.,Uegaki, K. Alteration of molecular assembly of peroxiredoxins from hyperthermophilic archaea J. Biochem. 2017 162 415 422 5Z25 29484831 Trimeric Alpha-Helix-Inserted Circular Permutant of Cytochrome c555 2017-12-28 2018-03-07 Oda, A.,Nagao, S.,Yamanaka, M.,Ueda, I.,Watanabe, H.,Uchihashi, T.,Shibata, N.,Higuchi, Y.,Hirota, S. Construction of a Triangle-Shaped Trimer and a Tetrahedron Using an alpha-Helix-Inserted Circular Permutant of Cytochrome c555. Chem Asian J 2018 13 964 967 5X2B Crystal structure of mouse sulfotransferase SULT7A1 complexed with PAP 2017-01-31 2018-03-28 Tanaka, S.,Kakuta, Y. Crystal structure of mouse sulfotransferase SULT7A1 complexed with PAP To Be Published 0 0 0 0 5X7Y 30728436 Crystal Structure of the Dog Lipocalin Allergen Can f 6 2017-02-28 2018-04-04 Yamamoto, K.,Ishibashi, O.,Sugiura, K.,Ubatani, M.,Sakaguchi, M.,Nakatsuji, M.,Shimamoto, S.,Noda, M.,Uchiyama, S.,Fukutomi, Y.,Nishimura, S.,Inui, T. Crystal structure of the dog allergen Can f 6 and structure-based implications of its cross-reactivity with the cat allergen Fel d 4. Sci Rep 2019 9 1503 1503 5Z41 29645090 Aquifex aeolicus MutL endonuclease domain with a single zinc ion. 2018-01-10 2018-04-25 Fukui, K.,Baba, S.,Kumasaka, T.,Yano, T. Multiple zinc ions maintain the open conformation of the catalytic site in the DNA mismatch repair endonuclease MutL from Aquifex aeolicus FEBS Lett. 2018 592 1611 1619 5Z42 29645090 Aquifex aeolicus MutL endonuclease domain with three zinc ions. 2018-01-10 2018-04-25 Fukui, K.,Baba, S.,Kumasaka, T.,Yano, T. Multiple zinc ions maintain the open conformation of the catalytic site in the DNA mismatch repair endonuclease MutL from Aquifex aeolicus FEBS Lett. 2018 592 1611 1619 5XHU Crystal structure of ycgT from bacillus subtilis 2017-04-24 2018-05-02 Komori, H. Crystal structure of ycgT from bacillus subtilis To Be Published 0 0 0 0 5YY0 29915046 Crystal structure of the HyhL-HypA complex (form II) 2017-12-07 2018-06-20 Kwon, S.,Watanabe, S.,Nishitani, Y.,Kawashima, T.,Kanai, T.,Atomi, H.,Miki, K. Crystal structures of a [NiFe] hydrogenase large subunit HyhL in an immature state in complex with a Ni chaperone HypA. Proc. Natl. Acad. Sci. U.S.A. 2018 115 7045 7050 5YOJ 29852069 Structure of A17 HIV-1 Protease in Complex with Inhibitor KNI-1657 2017-10-29 2018-07-11 Hidaka, K.,Kimura, T.,Sankaranarayanan, R.,Wang, J.,McDaniel, K.F.,Kempf, D.J.,Kameoka, M.,Adachi, M.,Kuroki, R.,Nguyen, J.T.,Hayashi, Y.,Kiso, Y. 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Planta 2020 252 72 72 6IK8 33011862 Crystal structure of tomato beta-galactosidase (TBG) 4 in complex with beta-1,6-galactobiose 2018-10-15 2018-11-28 Matsuyama, K.,Kondo, T.,Igarashi, K.,Sakamoto, T.,Ishimaru, M. Substrate-recognition mechanism of tomato beta-galactosidase 4 using X-ray crystallography and docking simulation. Planta 2020 252 72 72 5ZOU 30563857 Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by ethylamine at pH6 at 288 K (1) 2018-04-16 2018-12-19 Murakawa, T.,Baba, S.,Kawano, Y.,Hayashi, H.,Yano, T.,Kumasaka, T.,Yamamoto, M.,Tanizawa, K.,Okajima, T. In crystallothermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase Proc. Natl. Acad. Sci. U.S.A. 2019 116 135 140 5ZOW 30563857 Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by ethylamine at pH 6 at 288 K (2) 2018-04-16 2018-12-19 Murakawa, T.,Baba, S.,Kawano, Y.,Hayashi, H.,Yano, T.,Kumasaka, T.,Yamamoto, M.,Tanizawa, K.,Okajima, T. In crystallothermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase Proc. Natl. Acad. Sci. U.S.A. 2019 116 135 140 5ZOX 30563857 Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by ethylamine at pH 7 at 288 K (1) 2018-04-16 2018-12-19 Murakawa, T.,Baba, S.,Kawano, Y.,Hayashi, H.,Yano, T.,Kumasaka, T.,Yamamoto, M.,Tanizawa, K.,Okajima, T. In crystallothermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase. Proc. Natl. Acad. Sci. U.S.A. 2019 116 135 140 5ZOY 30563857 Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by ethylamine at pH 7 at 288 K (2) 2018-04-16 2018-12-19 Murakawa, T.,Baba, S.,Kawano, Y.,Hayashi, H.,Yano, T.,Kumasaka, T.,Yamamoto, M.,Tanizawa, K.,Okajima, T. In crystallothermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase Proc. Natl. Acad. Sci. U.S.A. 2019 116 135 140 5ZOZ 30563857 Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by ethylamine at pH 8 at 288 K (1) 2018-04-16 2018-12-19 Murakawa, T.,Baba, S.,Kawano, Y.,Hayashi, H.,Yano, T.,Kumasaka, T.,Yamamoto, M.,Tanizawa, K.,Okajima, T. In crystallothermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase. Proc. Natl. Acad. Sci. U.S.A. 2019 116 135 140 5ZP0 30563857 Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by ethylamine at pH 8 at 288 K (2) 2018-04-16 2018-12-19 Murakawa, T.,Baba, S.,Kawano, Y.,Hayashi, H.,Yano, T.,Kumasaka, T.,Yamamoto, M.,Tanizawa, K.,Okajima, T. In crystallothermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase. Proc. Natl. Acad. Sci. U.S.A. 2019 116 135 140 5ZP1 30563857 Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by ethylamine at pH 9 at 288 K (1) 2018-04-16 2018-12-19 Murakawa, T.,Baba, S.,Kawano, Y.,Hayashi, H.,Yano, T.,Kumasaka, T.,Yamamoto, M.,Tanizawa, K.,Okajima, T. In crystallothermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase. Proc. Natl. Acad. Sci. U.S.A. 2019 116 135 140 5ZP2 30563857 Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by ethylamine at pH 9 at 288 K (2) 2018-04-16 2018-12-19 Murakawa, T.,Baba, S.,Kawano, Y.,Hayashi, H.,Yano, T.,Kumasaka, T.,Yamamoto, M.,Tanizawa, K.,Okajima, T. In crystallothermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase. Proc. Natl. Acad. Sci. U.S.A. 2019 116 135 140 5ZP3 30563857 Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by ethylamine at pH 10 at 288 K (1) 2018-04-16 2018-12-19 Murakawa, T.,Baba, S.,Kawano, Y.,Hayashi, H.,Yano, T.,Kumasaka, T.,Yamamoto, M.,Tanizawa, K.,Okajima, T. In crystallothermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase. Proc. Natl. Acad. Sci. U.S.A. 2019 116 135 140 5ZP4 30563857 Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by ethylamine at pH 10 at 288 K (2) 2018-04-16 2018-12-19 Murakawa, T.,Baba, S.,Kawano, Y.,Hayashi, H.,Yano, T.,Kumasaka, T.,Yamamoto, M.,Tanizawa, K.,Okajima, T. In crystallothermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase. Proc. Natl. Acad. Sci. U.S.A. 2019 116 135 140 5ZP5 30563857 Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by ethylamine at pH 6 at 277 K (1) 2018-04-16 2018-12-19 Murakawa, T.,Baba, S.,Kawano, Y.,Hayashi, H.,Yano, T.,Kumasaka, T.,Yamamoto, M.,Tanizawa, K.,Okajima, T. In crystallothermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase Proc. Natl. Acad. Sci. U.S.A. 2019 116 135 140 5ZP6 30563857 Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by ethylamine at pH 6 at 277 K (2) 2018-04-16 2018-12-19 Murakawa, T.,Baba, S.,Kawano, Y.,Hayashi, H.,Yano, T.,Kumasaka, T.,Yamamoto, M.,Tanizawa, K.,Okajima, T. In crystallothermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase. Proc. Natl. Acad. Sci. U.S.A. 2019 116 135 140 5ZP7 30563857 Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by ethylamine at pH 6 at 277 K (3) 2018-04-16 2018-12-19 Murakawa, T.,Baba, S.,Kawano, Y.,Hayashi, H.,Yano, T.,Kumasaka, T.,Yamamoto, M.,Tanizawa, K.,Okajima, T. In crystallothermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase. Proc. Natl. Acad. Sci. U.S.A. 2019 116 135 140 5ZP8 30563857 Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by ethylamine at pH 6 at 277 K (4) 2018-04-16 2018-12-19 Murakawa, T.,Baba, S.,Kawano, Y.,Hayashi, H.,Yano, T.,Kumasaka, T.,Yamamoto, M.,Tanizawa, K.,Okajima, T. In crystallothermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase. Proc. Natl. Acad. Sci. U.S.A. 2019 116 135 140 5ZP9 30563857 Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by ethylamine at pH 6 at 283 K (1) 2018-04-16 2018-12-19 Murakawa, T.,Baba, S.,Kawano, Y.,Hayashi, H.,Yano, T.,Kumasaka, T.,Yamamoto, M.,Tanizawa, K.,Okajima, T. In crystallothermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase. Proc. Natl. Acad. Sci. U.S.A. 2019 116 135 140 5ZPA 30563857 Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by ethylamine at pH 6 at 283 K (2) 2018-04-16 2018-12-19 Murakawa, T.,Baba, S.,Kawano, Y.,Hayashi, H.,Yano, T.,Kumasaka, T.,Yamamoto, M.,Tanizawa, K.,Okajima, T. In crystallothermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase. Proc. Natl. Acad. Sci. U.S.A. 2019 116 135 140 5ZPB 30563857 Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by ethylamine at pH 6 at 283 K (3) 2018-04-16 2018-12-19 Murakawa, T.,Baba, S.,Kawano, Y.,Hayashi, H.,Yano, T.,Kumasaka, T.,Yamamoto, M.,Tanizawa, K.,Okajima, T. In crystallothermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase Proc. Natl. Acad. Sci. U.S.A. 2019 116 135 140 5ZPC 30563857 Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by ethylamine at pH 6 at 283 K (4) 2018-04-16 2018-12-19 Murakawa, T.,Baba, S.,Kawano, Y.,Hayashi, H.,Yano, T.,Kumasaka, T.,Yamamoto, M.,Tanizawa, K.,Okajima, T. In crystallothermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase Proc. Natl. Acad. Sci. U.S.A. 2019 116 135 140 5ZPD 30563857 Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by ethylamine at pH 6 at 288 K (1) 2018-04-16 2018-12-19 Murakawa, T.,Baba, S.,Kawano, Y.,Hayashi, H.,Yano, T.,Kumasaka, T.,Yamamoto, M.,Tanizawa, K.,Okajima, T. In crystallothermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase Proc. Natl. Acad. Sci. U.S.A. 2019 116 135 140 5ZPE 30563857 Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by ethylamine at pH 6 at 288 K (2) 2018-04-16 2018-12-19 Murakawa, T.,Baba, S.,Kawano, Y.,Hayashi, H.,Yano, T.,Kumasaka, T.,Yamamoto, M.,Tanizawa, K.,Okajima, T. In crystallothermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase Proc. Natl. Acad. Sci. U.S.A. 2019 116 135 140 5ZPF 30563857 Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by ethylamine at pH 6 at 288 K (3) 2018-04-16 2018-12-19 Murakawa, T.,Baba, S.,Kawano, Y.,Hayashi, H.,Yano, T.,Kumasaka, T.,Yamamoto, M.,Tanizawa, K.,Okajima, T. In crystallothermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase Proc. Natl. Acad. Sci. U.S.A. 2019 116 135 140 5ZPG 30563857 Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by ethylamine at pH6 at 293K (1) 2018-04-16 2018-12-19 Murakawa, T.,Baba, S.,Kawano, Y.,Hayashi, H.,Yano, T.,Kumasaka, T.,Yamamoto, M.,Tanizawa, K.,Okajima, T. In crystallothermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase Proc. Natl. Acad. Sci. U.S.A. 2019 116 135 140 5ZPH 30563857 Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by ethylamine at pH6 at 293K (2) 2018-04-16 2018-12-19 Murakawa, T.,Baba, S.,Kawano, Y.,Hayashi, H.,Yano, T.,Kumasaka, T.,Yamamoto, M.,Tanizawa, K.,Okajima, T. In crystallothermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase Proc. Natl. Acad. Sci. U.S.A. 2019 116 135 140 5ZPI 30563857 Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by ethylamine at pH 6 at 293 K (3) 2018-04-16 2018-12-19 Murakawa, T.,Baba, S.,Kawano, Y.,Hayashi, H.,Yano, T.,Kumasaka, T.,Yamamoto, M.,Tanizawa, K.,Okajima, T. In crystallothermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase Proc. Natl. Acad. Sci. U.S.A. 2019 116 135 140 5ZPJ 30563857 Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by phenylethylamine at pH 6 at 288 K (1) 2018-04-16 2018-12-19 Murakawa, T.,Baba, S.,Kawano, Y.,Hayashi, H.,Yano, T.,Kumasaka, T.,Yamamoto, M.,Tanizawa, K.,Okajima, T. In crystallothermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase Proc. Natl. Acad. Sci. U.S.A. 2019 116 135 140 5ZPK 30563857 Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by phenylethylamine at pH 6 at 288 K (2) 2018-04-16 2018-12-19 Murakawa, T.,Baba, S.,Kawano, Y.,Hayashi, H.,Yano, T.,Kumasaka, T.,Yamamoto, M.,Tanizawa, K.,Okajima, T. In crystallothermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase Proc. Natl. Acad. Sci. U.S.A. 2019 116 135 140 5ZPL 30563857 Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by phenylethylamine at pH 7 at 288 K (1) 2018-04-16 2018-12-19 Murakawa, T.,Baba, S.,Kawano, Y.,Hayashi, H.,Yano, T.,Kumasaka, T.,Yamamoto, M.,Tanizawa, K.,Okajima, T. In crystallothermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase. Proc. Natl. Acad. Sci. U.S.A. 2019 116 135 140 5ZPM 30563857 Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by phenylethylamine at pH 7 at 288 K (2) 2018-04-16 2018-12-19 Murakawa, T.,Baba, S.,Kawano, Y.,Hayashi, H.,Yano, T.,Kumasaka, T.,Yamamoto, M.,Tanizawa, K.,Okajima, T. In crystallothermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase. Proc. Natl. Acad. Sci. U.S.A. 2019 116 135 140 5ZPN 30563857 Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by phenylethylamine at pH 8 at 288 K (1) 2018-04-16 2018-12-19 Murakawa, T.,Baba, S.,Kawano, Y.,Hayashi, H.,Yano, T.,Kumasaka, T.,Yamamoto, M.,Tanizawa, K.,Okajima, T. In crystallothermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase. Proc. Natl. Acad. Sci. U.S.A. 2019 116 135 140 5ZPO 30563857 Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by phenylethylamine at pH 8 at 288 K (2) 2018-04-16 2018-12-19 Murakawa, T.,Baba, S.,Kawano, Y.,Hayashi, H.,Yano, T.,Kumasaka, T.,Yamamoto, M.,Tanizawa, K.,Okajima, T. In crystallothermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase. Proc. Natl. Acad. Sci. U.S.A. 2019 116 135 140 5ZPP 30563857 Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by phenylethylamine at pH 8 at 288 K (3) 2018-04-16 2018-12-19 Murakawa, T.,Baba, S.,Kawano, Y.,Hayashi, H.,Yano, T.,Kumasaka, T.,Yamamoto, M.,Tanizawa, K.,Okajima, T. In crystallothermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase. Proc. Natl. Acad. Sci. U.S.A. 2019 116 135 140 5ZPQ 30563857 Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by phenylethylamine at pH 9 at 288 K (1) 2018-04-16 2018-12-19 Murakawa, T.,Baba, S.,Kawano, Y.,Hayashi, H.,Yano, T.,Kumasaka, T.,Yamamoto, M.,Tanizawa, K.,Okajima, T. In crystallothermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase. Proc. Natl. Acad. Sci. U.S.A. 2019 116 135 140 5ZPR 30563857 Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by phenylethylamine at pH 9 at 288 K (2) 2018-04-16 2018-12-19 Murakawa, T.,Baba, S.,Kawano, Y.,Hayashi, H.,Yano, T.,Kumasaka, T.,Yamamoto, M.,Tanizawa, K.,Okajima, T. In crystallothermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase. Proc. Natl. Acad. Sci. U.S.A. 2019 116 135 140 5ZPS 30563857 Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by phenylethylamine at pH 10 at 288 K (1) 2018-04-16 2018-12-19 Murakawa, T.,Baba, S.,Kawano, Y.,Hayashi, H.,Yano, T.,Kumasaka, T.,Yamamoto, M.,Tanizawa, K.,Okajima, T. In crystallothermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase. Proc. Natl. Acad. Sci. U.S.A. 2019 116 135 140 5ZPT 30563857 Copper amine oxidase from Arthrobacter globiformis anaerobically reduced by phenylethylamine at pH 10 at 288 K (2) 2018-04-16 2018-12-19 Murakawa, T.,Baba, S.,Kawano, Y.,Hayashi, H.,Yano, T.,Kumasaka, T.,Yamamoto, M.,Tanizawa, K.,Okajima, T. In crystallothermodynamic analysis of conformational change of the topaquinone cofactor in bacterial copper amine oxidase. Proc. Natl. Acad. Sci. U.S.A. 2019 116 135 140 6A8H 30511671 Crystal structure of endo-arabinanase ABN-TS D27A mutant in complex with arabinotriose 2018-07-09 2018-12-19 Yamaguchi, A.,Sogabe, Y.,Fukuoka, S.,Sakai, T.,Tada, T. Structures of endo-1,5-alpha-L-arabinanase mutants from Bacillus thermodenitrificans TS-3 in complex with arabino-oligosaccharides. Acta Crystallogr F Struct Biol 2018 74 774 780 5Z0G Crystal structure of copper-bound tyrosinase from Streptomyces castaneoglobisporus in complex with the caddie protein obtained by soaking in the hydroxylamine-containing solution for 20 min at 298 K 2017-12-19 2018-12-26 Matoba, Y.,Sugiyama, M. Catalytic mechanism of tyrosinase implied from the quinone formation on the Tyr98 residue of the caddie protein To Be Published 0 0 0 0 5Z0I Crystal structure of copper-bound tyrosinase from Streptomyces castaneoglobisporus in complex with the caddie protein obtained by soaking in the hydroxylamine-containing solution for 1 h at 277 K 2017-12-19 2018-12-26 Matoba, Y.,Sugiyama, M. Catalytic mechanism of tyrosinase implied from the quinone formation on the Tyr98 residue of the caddie protein To Be Published 0 0 0 0 5Z0J Crystal structure of copper-bound tyrosinase from Streptomyces castaneoglobisporus in complex with the caddie protein obtained by soaking in the hydroxylamine-containing solution for 2 h at 277 K 2017-12-19 2018-12-26 Matoba, Y.,Sugiyama, M. Catalytic mechanism of tyrosinase implied from the quinone formation on the Tyr98 residue of the caddie protein To Be Published 0 0 0 0 5Z0K Crystal structure of copper-bound tyrosinase from Streptomyces castaneoglobisporus in complex with the caddie protein obtained by soaking in the hydroxylamine-containing solution for 4 h at 277 K 2017-12-19 2018-12-26 Matoba, Y.,Sugiyama, M. Catalytic mechanism of tyrosinase implied from the quinone formation on the Tyr98 residue of the caddie protein To Be Published 0 0 0 0 5Z0L Crystal structure of copper-bound tyrosinase from Streptomyces castaneoglobisporus in complex with the caddie protein obtained by soaking in the hydroxylamine-containing solution for 9 h at 277 K 2017-12-19 2018-12-26 Matoba, Y.,Sugiyama, M. Catalytic mechanism of tyrosinase implied from the quinone formation on the Tyr98 residue of the caddie protein To Be Published 0 0 0 0 5Z2B Crystal structure of highly active BTUO mutant P287G Improved by Humidity Control at 86% RH 2018-01-02 2019-01-02 Hibi, T.,Itoh, T.,Nishiya, Y. Flexibility of a Distal Interface Loop Modulates Water Network in the Active Site of Bacillus sp. TB-90 Urate Oxidase to be published 0 0 0 0 5Z6C Crystal structure of Bacillus subtilis sugar-binding protein YesO involved in import of rhamnogalacturonan 2018-01-22 2019-01-23 Sugiura, H.,Oiki, S.,Mikami, B.,Murata, K.,Hashimoto, W. Crystal structure of Bacillus subtilis sugar-binding protein YesO involved in import of rhamnogalacturonan To Be Published 0 0 0 0 6A77 30595454 Crystal structure of the fifth immunoglobulin domain (Ig5) of human Robo1 in complex with the Fab fragment of murine monoclonal antibody B5209B 2018-07-02 2019-01-30 Yamashita, T.,Mizohata, E.,Nagatoishi, S.,Watanabe, T.,Nakakido, M.,Iwanari, H.,Mochizuki, Y.,Nakayama, T.,Kado, Y.,Yokota, Y.,Matsumura, H.,Kawamura, T.,Kodama, T.,Hamakubo, T.,Inoue, T.,Fujitani, H.,Tsumoto, K. Affinity Improvement of a Cancer-Targeted Antibody through Alanine-Induced Adjustment of Antigen-Antibody Interface. Structure 2019 27 519 0 5YA6 30898768 Crystal structure of archaeal flagellin FlaB1 from Methanocaldococcus jannaschii 2017-08-30 2019-02-06 Meshcheryakov, V.A.,Shibata, S.,Schreiber, M.T.,Villar-Briones, A.,Jarrell, K.F.,Aizawa, S.I.,Wolf, M. High-resolution archaellum structure reveals a conserved metal-binding site. Embo Rep. 2019 20 0 0 5Z8B Truncated N-acetylglucosaminyl transferase KfiA from E. coli K5 strain apo form 2018-01-31 2019-02-06 Hori, H.,Kakuta, Y. Crysta structure of N-acetylglucosaminyl transferase KfiA from E. coli K5 strain To Be Published 0 0 0 0 6IQG 30606013 X-ray crystal structure of Fc and peptide complex 2018-11-08 2019-02-13 Kishimoto, S.,Nakashimada, Y.,Yokota, R.,Hatanaka, T.,Adachi, M.,Ito, Y. Site-Specific Chemical Conjugation of Antibodies by Using Affinity Peptide for the Development of Therapeutic Antibody Format. Bioconjug. Chem. 2019 30 698 702 6J7C 30773259 Crystal structure of proline racemase-like protein from Thermococcus litoralis in complex with proline 2019-01-17 2019-02-27 Watanabe, Y.,Watanabe, S.,Itoh, Y.,Watanabe, Y. Crystal structure of substrate-bound bifunctional proline racemase/hydroxyproline epimerase from a hyperthermophilic archaeon. Biochem. Biophys. Res. Commun. 2019 511 135 140 6IU0 30796432 Peroxiredoxin from Thermococcus kodakaraensis (0Cys mutant) 2018-11-27 2019-03-06 Himiyama, T.,Oshima, M.,Uegaki, K.,Nakamura, T. Distinct molecular assembly of homologous peroxiredoxins from Pyrococcus horikoshii and Thermococcus kodakaraensis. J.Biochem. 2019 166 89 95 6IU1 30796432 Peroxiredoxin from Pyrococcus horikoshii 0Cys mutant) 2018-11-27 2019-03-06 Himiyama, T.,Oshima, M.,Uegaki, K.,Nakamura, T. Distinct molecular assembly of homologous peroxiredoxins from Pyrococcus horikoshii and Thermococcus kodakaraensis. J.Biochem. 2019 166 89 95 5ZMJ 31584011 Crystal structure of the Fab region of a neutralizing fully human antibody against GM-CSF 2018-04-04 2019-04-17 Angkawidjaja, C.,Torashima, T. Crystal structure of the Fab region of a neutralizing antibody against granulocyte-macrophage colony-stimulating factor. Acta Crystallogr.,Sect.F 2019 75 634 639 5Z3A 34665923 Glycosidase Wild Type 2018-01-05 2019-05-15 Tagami, T.,Chen, M.,Furunaga, Y.,Kikuchi, A.,Sadahiro, J.,Lang, W.,Okuyama, M.,Tanaka, Y.,Iwasaki, T.,Yao, M.,Kimura, A. Structural insights reveal the second base catalyst of isomaltose glucohydrolase. Febs J. 2022 289 1118 1134 5Z3B 34665923 Glycosidase Y48F 2018-01-05 2019-05-15 Tagami, T.,Chen, M.,Furunaga, Y.,Kikuchi, A.,Sadahiro, J.,Lang, W.,Okuyama, M.,Tanaka, Y.,Iwasaki, T.,Yao, M.,Kimura, A. Structural insights reveal the second base catalyst of isomaltose glucohydrolase. Febs J. 2022 289 1118 1134 5Z3D 34665923 Glycosidase F290Y 2018-01-05 2019-05-15 Tagami, T.,Chen, M.,Furunaga, Y.,Kikuchi, A.,Sadahiro, J.,Lang, W.,Okuyama, M.,Tanaka, Y.,Iwasaki, T.,Yao, M.,Kimura, A. Structural insights reveal the second base catalyst of isomaltose glucohydrolase. Febs J. 2022 289 1118 1134 6A6R 30700768 Crystal structure of the modified fructosyl peptide oxidase from Aspergillus nidulans, Seleno-methionine Derivative 2018-06-29 2019-05-15 Ogawa, N.,Kimura, T.,Umehara, F.,Katayama, Y.,Nagai, G.,Suzuki, K.,Aisaka, K.,Maruyama, Y.,Itoh, T.,Hashimoto, W.,Murata, K.,Ichimura, M. Creation of haemoglobin A1c direct oxidase from fructosyl peptide oxidase by combined structure-based site specific mutagenesis and random mutagenesis. Sci Rep 2019 9 942 942 6A6T 30700768 Crystal structure of the modified fructosyl peptide oxidase from Aspergillus nidulans with R61G mutation 2018-06-29 2019-05-15 Ogawa, N.,Kimura, T.,Umehara, F.,Katayama, Y.,Nagai, G.,Suzuki, K.,Aisaka, K.,Maruyama, Y.,Itoh, T.,Hashimoto, W.,Murata, K.,Ichimura, M. Creation of haemoglobin A1c direct oxidase from fructosyl peptide oxidase by combined structure-based site specific mutagenesis and random mutagenesis. Sci Rep 2019 9 942 942 5ZU3 30715389 Effect of mutation (R554K) on FAD modification in Aspergillus oryzae RIB40formate oxidase 2018-05-06 2019-05-22 Doubayashi, D.,Oki, M.,Mikami, B.,Uchida, H. The microenvironment surrounding FAD mediates its conversion to 8-formyl-FAD in Aspergillus oryzae RIB40 formate oxidase. J.Biochem. 2019 166 67 75 6A9K Crystal structure of the complex of the hydrolytic antibody Fab 9C10 with a transition-state analog 2018-07-13 2019-07-24 Tsuchiya, Y.,Fujii, I.,Tada, T.,Yamaguchi, A.,Tsumuraya, T.,Kumon, A. Crystal structure of the complex of the hydrolytic antibody Fab 9C10 with a transition-state analog To Be Published 0 0 0 0 6IRI 31520614 Crystal structure of the minor ferredoxin from Thermosynechococcus elongatus 2018-11-13 2019-09-18 Motomura, T.,Zuccarello, L.,Setif, P.,Boussac, A.,Umena, Y.,Lemaire, D.,Tripathy, J.N.,Sugiura, M.,Hienerwadel, R.,Shen, J.R.,Berthomieu, C. An alternative plant-like cyanobacterial ferredoxin with unprecedented structural and functional properties. Biochim Biophys Acta Bioenerg 2019 1860 148084 148084 6K5J 31501879 Structure of a glycoside hydrolase family 3 beta-N-acetylglucosaminidase from Paenibacillus sp. str. FPU-7 2019-05-29 2019-09-25 Itoh, T.,Araki, T.,Nishiyama, T.,Hibi, T.,Kimoto, H. Structural and functional characterization of a glycoside hydrolase family 3 beta-N-acetylglucosaminidase from Paenibacillus sp. str. FPU-7. J.Biochem. 2019 166 503 515 6JP6 31586407 The X-ray structure of yeast tRNA methyltransferase complex of Trm7 and Trm734 essential for 2'-O-methylation at the first position of anticodon in specific tRNAs 2019-03-26 2019-10-02 Hirata, A.,Okada, K.,Yoshii, K.,Shiraishi, H.,Saijo, S.,Yonezawa, K.,Shimizu, N.,Hori, H. Structure of tRNA methyltransferase complex of Trm7 and Trm734 reveals a novel binding interface for tRNA recognition. Nucleic Acids Res. 2019 47 10942 10955 6IGU Crystal structure of the hydrolytic antibody Fab 9C10 2018-09-26 2019-10-09 Tsuchiya, Y.,Tada, T.,Yamaguchi, A.,Kumon, A.,Tsumuraya, T.,Fujii, I. Crystal structure of the complex of the hydrolytic antibody Fab 9C10 and a transition-state analog To Be Published 0 0 0 0 6KFN 31619701 Crystal structure of alginate lyase from Paenibacillus sp. str. FPU-7 2019-07-08 2019-10-30 Itoh, T.,Nakagawa, E.,Yoda, M.,Nakaichi, A.,Hibi, T.,Kimoto, H. Structural and biochemical characterisation of a novel alginate lyase from Paenibacillus sp. str. FPU-7. Sci Rep 2019 9 14870 14870 6JIL 31793174 Crystal structure of D-cycloserine synthetase DcsG 2019-02-22 2019-12-18 Matoba, Y.,Uda, N.,Kudo, M.,Sugiyama, M. Cyclization mechanism catalyzed by an ATP-grasp enzyme essential for d-cycloserine biosynthesis. Febs J. 2020 287 2763 2778 6K0P 31788942 Catalytic domain of GH87 alpha-1,3-glucanase D1045A in complex with nigerose 2019-05-07 2019-12-25 Itoh, T.,Intuy, R.,Suyotha, W.,Hayashi, J.,Yano, S.,Makabe, K.,Wakayama, M.,Hibi, T. Structural insights into substrate recognition and catalysis by glycoside hydrolase family 87 alpha-1,3-glucanase from Paenibacillus glycanilyticus FH11. Febs J. 2020 287 2524 2543 6K0Q 31788942 Catalytic domain of GH87 alpha-1,3-glucanase D1068A in complex with nigerose 2019-05-07 2019-12-25 Itoh, T.,Intuy, R.,Suyotha, W.,Hayashi, J.,Yano, S.,Makabe, K.,Wakayama, M.,Hibi, T. Structural insights into substrate recognition and catalysis by glycoside hydrolase family 87 alpha-1,3-glucanase from Paenibacillus glycanilyticus FH11. Febs J. 2020 287 2524 2543 6K0S 31788942 Catalytic domain of GH87 alpha-1,3-glucanase D1069A in complex with nigerose 2019-05-07 2019-12-25 Itoh, T.,Intuy, R.,Suyotha, W.,Hayashi, J.,Yano, S.,Makabe, K.,Wakayama, M.,Hibi, T. Structural insights into substrate recognition and catalysis by glycoside hydrolase family 87 alpha-1,3-glucanase from Paenibacillus glycanilyticus FH11. Febs J. 2020 287 2524 2543 6K0U 31788942 Catalytic domain of GH87 alpha-1,3-glucanase D1068A in complex with tetrasaccharides 2019-05-07 2019-12-25 Itoh, T.,Intuy, R.,Suyotha, W.,Hayashi, J.,Yano, S.,Makabe, K.,Wakayama, M.,Hibi, T. Structural insights into substrate recognition and catalysis by glycoside hydrolase family 87 alpha-1,3-glucanase from Paenibacillus glycanilyticus FH11. Febs J. 2020 287 2524 2543 6KIL N21Q mutant thioredoxin from Halobacterium salinarum NRC-1 2019-07-19 2020-01-15 Arai, S.,Shibazaki, C.,Shimizu, R.,Adachi, M.,Ishibashi, M.,Tokunaga, H.,Tokunaga, M. Catalytic mechanism and evolutional characteristics of thioredoxin from Halobacterium salinarum NRC-1. Acta Crystallogr.,Sect.D 2020 76 73 84 6JBO Crystal structure of EfeO-like protein Algp7 containing samarium ion 2019-01-26 2020-01-29 Okumura, K.,Takase, R.,Maruyama, Y.,Mikami, B.,Murata, K.,Hashimoto, W. Rare metal binding by a cell-surface component of bacterial EfeUOB iron importer To Be Published 0 0 0 0 6JHX Crystal structure of alginate-binding protein AlgQ2 without calcium ion 2019-02-19 2020-02-19 Okumura, K.,Maruyama, Y.,Mikami, B.,Murata, K.,Hashimoto, W. Crystal structure of alginate-binding protein AlgQ2 without calcium ion To Be Published 0 0 0 0 6JIG 32296055 Crystal structure of GMP reductase C318A from Trypanosoma brucei in complex with guanosine 5'-monophosphate 2019-02-21 2020-02-26 Imamura, A.,Okada, T.,Mase, H.,Otani, T.,Kobayashi, T.,Tamura, M.,Kubata, B.K.,Inoue, K.,Rambo, R.P.,Uchiyama, S.,Ishii, K.,Nishimura, S.,Inui, T. 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Arch.Biochem.Biophys. 2020 688 108370 108370 6K52 Hyperthermophilic GH6 cellobiohydrolase (HmCel6A) from the microbial flora of a Japanese hot spring 2019-05-28 2020-06-03 Takeda, M.,Baba, S.,Okuma, J.,Hirose, Y.,Nishimura, A.,Takata, M.,Oda, K.,Shibata, D.,Kondo, Y.,Kumasaka, T. A hyperthermophilic cellobiohydrolase mined from a hot spring metagenomic data To Be Published 0 0 0 0 6K53 A variant of metagenome-derived GH6 cellobiohydrolase, HmCel6A (P88S/L230F/F414S) 2019-05-28 2020-06-03 Takeda, M.,Baba, S.,Okuma, J.,Hirose, Y.,Nishimura, A.,Takata, M.,Oda, K.,Shibata, D.,Kondo, Y.,Kumasaka, T. A hyperthermophilic GH6 cellobiohydrolase (HmCel6A) from a hot spring metagenomic data To Be Published 0 0 0 0 6K54 Hyperthermophilic GH6 cellobiohydrolase II (HmCel6A) in complex with trisaccharide 2019-05-28 2020-06-03 Takeda, M.,Baba, S.,Okuma, J.,Hirose, Y.,Nishimura, A.,Takata, M.,Oda, K.,Shibata, D.,Kondo, Y.,Kumasaka, T. Novel hyperthermophilic cellobiohydrolase II isolated from hot spring microbial community To Be Published 0 0 0 0 6K55 Inactivated mutant (D140A) of Hyperthermophilic GH6 cellobiohydrolase II (HmCel6A) in complex with hexasaccharide 2019-05-28 2020-06-03 Takeda, M.,Baba, S.,Okuma, J.,Hirose, Y.,Nishimura, A.,Takata, M.,Oda, K.,Shibata, D.,Kondo, Y.,Kumasaka, T. A hyperthermophilic cellobiohydrolase mined from a hot spring metagenomic data To Be Published 0 0 0 0 6K76 Glycerol kinase form Thermococcus kodakarensis, complex structure with substrate. 2019-06-06 2020-06-10 Hokao, R.,Matsumura, H.,Katsumi, R.,Angkawidjaja, C.,Takano, K.,Kanaya, S.,Koga, Y. Structural analysis of hexameric structure of glycerol kinase from Thermococcus kodakaraeinsis KOD1 To Be Published 0 0 0 0 6KBI Crystal structure of ErbB3 N418Q mutant 2019-06-25 2020-07-01 Takahashi, M.,Kato, K.,Yao, M. 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A Lynch syndrome-associated mutation at a Bergerat ATP-binding fold destabilizes the structure of the DNA mismatch repair endonuclease MutL. J.Biol.Chem. 2020 295 11643 11655 7C0C 32697085 Crystal structure of Azospirillum brasilense L-2-keto-3-deoxyarabonate dehydratase (apo form) 2020-05-01 2020-08-05 Watanabe, S.,Watanabe, Y.,Nobuchi, R.,Ono, A. Biochemical and Structural Characterization of l-2-Keto-3-deoxyarabinonate Dehydratase: A Unique Catalytic Mechanism in the Class I Aldolase Protein Superfamily. Biochemistry 2020 59 2962 2973 7CMN Crystal Structure of Bacillus sp. TB-90 Urate Oxidase Improved by Humidity Control at 88% RH. 2020-07-28 2020-08-12 Hibi, T.,Itoh, T.,Nishiya, Y. Flexibility of a Distal Interface Loop Modulates Water Network in the Active Site of Bacillus sp. TB-90 Urate Oxidase To be published 0 0 0 0 7CMQ Crystal Structure of Bacillus sp. TB-90 Urate Oxidase Improved by Humidity Control at 88% RH. 2020-07-28 2020-08-12 Hibi, T.,Itoh, T.,Nishiya, Y. Flexibility of a Distal Interface Loop Modulates Water Network in the Active Site of Bacillus sp. TB-90 Urate Oxidase To be published 0 0 0 0 6KP3 34287046 STRUCTURE OF SENDAI VIRUS Y3/ALIX-BRO1 DOMAIN COMPLEX 2019-08-14 2020-08-19 Oda, K.,Matoba, Y.,Sugiyama, M.,Sakaguchi, T. Structural Insight into the Interaction of Sendai Virus C Protein with Alix To Stimulate Viral Budding. J.Virol. 2021 0 0 0 7CY3 Crystal structure of a biodegradable plastic-degrading cutinase from Paraphoma sp. B47-9. 2020-09-03 2020-09-30 Suzuki, K.,Koitabashi, M. Crystal structure of a biodegradable plastic-degrading cutinase from Paraphoma sp. B47-9. To Be Published 0 0 0 0 7CY9 Crystal structure of a biodegradable plastic-degrading cutinase from Paraphoma sp. B47-9 solved by getting the phase from anomalous scattering of uncovalently coordinated arsenic (cacodylate). 2020-09-03 2020-09-30 Suzuki, K.,Koitabashi, M. Crystal structure of a biodegradable plastic-degrading cutinase from Paraphoma sp. 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Sci Rep 2020 10 14886 14886 6LB4 Crystal structure of dimeric RXR-LBD complexed with NEt-3ME and TIF2 co-activator 2019-11-13 2020-11-18 Imai, D.,Numoto, N.,Nakano, S.,Kakuta, H.,Ito, N. Crystal structure of dimeric RXR-LBD complexed with NEt-3ME and TIF2 co-activator To Be Published 0 0 0 0 6LB5 Crystal structure of dimeric RXR-LBD complexed with full agonist NEt-3IB and TIF2 co-activator 2019-11-13 2020-11-18 Imai, D.,Numoto, N.,Nakano, S.,Kakuta, H.,Ito, N. Crystal structure of dimeric RXR-LBD complexed with full agonist NEt-3IB and TIF2 co-activator To Be Published 0 0 0 0 6LB6 Crystal structure of dimeric RXR-LBD complexed with partial agonist NEt-4IB and TIF2 co-activator 2019-11-13 2020-11-18 Imai, D.,Numoto, N.,Nakano, S.,Kakuta, H.,Ito, N. Crystal structure of dimeric RXR-LBD complexed with partial agonist NEt-4IB and TIF2 co-activator To Be Published 0 0 0 0 6LCA Crystal structure of human Dishevelled1 PDZ domain homotrimer 2019-11-18 2020-11-25 Yasukochi, S.,Numoto, N.,Tenno, N.,Tenno, T.,Ito, N.,Hiroaki, H. Crystal structure of human Dishevelled1 PDZ domain homotrimer To Be Published 0 0 0 0 7DGJ 33578251 The dimeric structure of K78H/G80A/H82A myoglobin 2020-11-12 2021-02-17 Nagao, S.,Idomoto, A.,Shibata, N.,Higuchi, Y.,Hirota, S. Rational design of metal-binding sites in domain-swapped myoglobin dimers. J.Inorg.Biochem. 2021 217 111374 111374 7DGL 33578251 The Ni-bound dimeric structure of K78H/G80A/H82A myoglobin 2020-11-12 2021-02-17 Nagao, S.,Idomoto, A.,Shibata, N.,Higuchi, Y.,Hirota, S. Rational design of metal-binding sites in domain-swapped myoglobin dimers. J.Inorg.Biochem. 2021 217 111374 111374 7DGM 33578251 The dimeric structure of K79H/G80A/H81A myoglobin 2020-11-12 2021-02-17 Nagao, S.,Idomoto, A.,Shibata, N.,Higuchi, Y.,Hirota, S. Rational design of metal-binding sites in domain-swapped myoglobin dimers. J.Inorg.Biochem. 2021 217 111374 111374 7DGN 33578251 The Co-bound dimeric structure of K79H/G80A/H81A myoglobin 2020-11-12 2021-02-17 Nagao, S.,Idomoto, A.,Shibata, N.,Higuchi, Y.,Hirota, S. Rational design of metal-binding sites in domain-swapped myoglobin dimers. J.Inorg.Biochem. 2021 217 111374 111374 7DGO 33578251 The Zn-bound dimeric structure of K79H/G80A/H81A myoglobin 2020-11-12 2021-02-17 Nagao, S.,Idomoto, A.,Shibata, N.,Higuchi, Y.,Hirota, S. Rational design of metal-binding sites in domain-swapped myoglobin dimers. J.Inorg.Biochem. 2021 217 111374 111374 7BY8 33723609 Malate Dehydrogenase from Geobacillus stearothermophilus (gs-MDH) 2020-04-22 2021-03-24 Shimozawa, Y.,Himiyama, T.,Nakamura, T.,Nishiya, Y. Structural analysis and reaction mechanism of malate dehydrogenase from Geobacillus stearothermophilus. J.Biochem. 2021 170 97 105 7CNP 34099860 Crystal structure of Agrobacterium tumefaciens aconitase X (apo-form) 2020-08-03 2021-06-16 Watanabe, S.,Murase, Y.,Watanabe, Y.,Sakurai, Y.,Tajima, K. Crystal structures of aconitase X enzymes from bacteria and archaea provide insights into the molecular evolution of the aconitase superfamily. Commun Biol 2021 4 687 687 7CNR 34099860 Crystal structure of Thermococcus kodakaraensis aconitase X (apo-form) 2020-08-03 2021-06-16 Watanabe, S.,Murase, Y.,Watanabe, Y.,Sakurai, Y.,Tajima, K. Crystal structures of aconitase X enzymes from bacteria and archaea provide insights into the molecular evolution of the aconitase superfamily. Commun Biol 2021 4 687 687 7D9X 33288198 Highly active mutant W525D of Gamma-glutamyltranspeptidase from Pseudomonas nitroreducens 2020-10-14 2021-06-23 Sano, C.,Itoh, T.,Phumsombat, P.,Hayashi, J.,Wakayama, M.,Hibi, T. Mutagenesis and structure-based analysis of the role of Tryptophan525 of gamma-glutamyltranspeptidase from Pseudomonas nitroreducens. Biochem.Biophys.Res.Commun. 2021 534 286 291 7EHQ 34195603 Chitin oligosaccharide binding protein 2021-03-30 2021-07-07 Itoh, T.,Yaguchi, M.,Nakaichi, A.,Yoda, M.,Hibi, T.,Kimoto, H. Structural characterization of two solute-binding proteins for N,N' -diacetylchitobiose/ N,N',N'' -triacetylchitotoriose of the gram-positive bacterium, Paenibacillus sp. str. FPU-7. J Struct Biol X 2021 5 100049 100049 7EHU 34195603 Chitin oligosaccharide binding protein 2021-03-30 2021-07-07 Itoh, T.,Yaguchi, M.,Nakaichi, A.,Yoda, M.,Hibi, T.,Kimoto, H. Structural characterization of two solute-binding proteins for N,N' -diacetylchitobiose/ N,N',N'' -triacetylchitotoriose of the gram-positive bacterium, Paenibacillus sp. str. FPU-7. J Struct Biol X 2021 5 100049 100049 7DPH 34102474 H-Ras Q61H in complex with GppNHp (state 1) after structural transition by humidity control 2020-12-19 2021-07-28 Matsumoto, S.,Taniguchi-Tamura, H.,Araki, M.,Kawamura, T.,Miyamoto, R.,Tsuda, C.,Shima, F.,Kumasaka, T.,Okuno, Y.,Kataoka, T. Oncogenic mutations Q61L and Q61H confer active form-like structural features to the inactive state (state 1) conformation of H-Ras protein. Biochem.Biophys.Res.Commun. 2021 565 85 90 7DPJ 34102474 H-Ras Q61L in complex with GppNHp (state 1) after structural transition by humidity control 2020-12-19 2021-07-28 Matsumoto, S.,Taniguchi-Tamura, H.,Araki, M.,Kawamura, T.,Miyamoto, R.,Tsuda, C.,Shima, F.,Kumasaka, T.,Okuno, Y.,Kataoka, T. Oncogenic mutations Q61L and Q61H confer active form-like structural features to the inactive state (state 1) conformation of H-Ras protein. Biochem.Biophys.Res.Commun. 2021 565 85 90 7DDU 34430810 Elephant seal myoglobin esMb 2020-10-29 2021-09-08 Isogai, Y.,Imamura, H.,Nakae, S.,Sumi, T.,Takahashi, K.I.,Shirai, T. Common and unique strategies of myoglobin evolution for deep-sea adaptation of diving mammals. Iscience 2021 24 102920 102920 7ML5 34762912 Structure of the Starch Branching Enzyme I (BEI) complexed with maltododecaose from Oryza sativa L 2021-04-27 2021-11-17 Gavgani, H.N.,Fawaz, R.,Ehyaei, N.,Walls, D.,Pawlowski, K.,Fulgos, R.,Park, S.,Assar, Z.,Ghanbarpour, A.,Geiger, J.H. A structural explanation for the mechanism and specificity of plant branching enzymes I and IIb. J.Biol.Chem. 2021 298 101395 101395 7E8R EcoT38I restriction endonuclease 2021-03-02 2022-03-02 Kita, K.,Mikami, B. Structural analysis of EcoT38I restriction endonuclease To Be Published 0 0 0 0 7EDC Crystal structure of mutant tRNA [Gm18] methyltransferase TrmH (E107G) in complex with S-adenosyl-L-methionine from Escherichia coli 2021-03-15 2022-03-23 Kono, Y.,Ito, A.,Okamoto, A.,Yamagami, R.,Hirata, A.,Hori, H. Unique substrate specificity of type II tRNA Gm18 methyltransferase from Escherichia coli To Be Published 0 0 0 0 7EIW Human histidine decarboxylase mutant Y334F reacted with histidine 2021-04-01 2022-04-06 Komori, H.,Nitta, Y. Structural analysis of the HDC Y334F mutant J Biol Macromol 2021 21 69 74 7EIX Human histidine decarboxylase mutant Y334F 2021-04-01 2022-04-06 Komori, H.,Nitta, Y. Structural analysis of the HDC Y334F mutant J Biol Macromol 2021 21 69 74 7EIY Human histidine decarboxylase mutant Y334F soaking with histidine 2021-04-01 2022-04-06 Komori, H.,Nitta, Y. Structural analysis of the HDC Y334F mutant J Biol Macromol 2021 21 69 74 7VUF 35439431 Crystal Structure of the core region of Thermus thermophilus MutS2. 2021-11-02 2022-04-06 Fukui, K.,Inoue, M.,Murakawa, T.,Baba, S.,Kumasaka, T.,Yano, T. Structural and functional insights into the mechanism by which MutS2 recognizes a DNA junction. Structure 2022 30 973 0 7VUK 35439431 Crystal Structure of the core region of Thermus thermophilus MutS2 complexed with ADP. 2021-11-02 2022-04-06 Fukui, K.,Inoue, M.,Murakawa, T.,Baba, S.,Kumasaka, T.,Yano, T. Structural and functional insights into the mechanism by which MutS2 recognizes a DNA junction. Structure 2022 30 973 0 7EUV X-ray structure of high-strength hydrogel-grown FABP3 crystal soaked in 50% DMSO solution containing Flurbiprofen 2021-05-19 2022-05-25 Sugiyama, S.,Kakinouchi, K.,Matsuoka, S.,Tsuchikawa, H.,Sonoyama, M.,Inoue, Y.,Hayashi, F.,Murata, M. X-ray structure of the human heart fatty acid-binding protein complexed with Flurbiprofen To Be Published 0 0 0 0 7WW9 35594391 Crystal structure of MutT-8-oxo-dGTP complex: Reaction for 1.5 hr in 20 mM Mn2+ 2022-02-12 2022-06-01 Nakamura, T.,Yamagata, Y. Visualization of mutagenic nucleotide processing by Escherichia coli MutT, a Nudix hydrolase. Proc.Natl.Acad.Sci.USA 2022 119 0 0 7WWA 35594391 Crystal structure of MutT-8-oxo-dGTP complex: Reaction for 2.5 hr in 20 mM Mn2+ 2022-02-12 2022-06-01 Nakamura, T.,Yamagata, Y. Visualization of mutagenic nucleotide processing by Escherichia coli MutT, a Nudix hydrolase. Proc.Natl.Acad.Sci.USA 2022 119 0 0 7X9I 35594391 Crystal structure of MutT-8-oxo-dGTP complex: Reaction for 12 hr using 5 mM Mn2+ 2022-03-15 2022-06-01 Nakamura, T.,Yamagata, Y. Visualization of mutagenic nucleotide processing by Escherichia coli MutT, a Nudix hydrolase. Proc.Natl.Acad.Sci.USA 2022 119 0 0 7X9J 35594391 Crystal structure of MutT-8-oxo-dGTP complex: Reaction for 24 hr using 5 mM Mn2+ 2022-03-15 2022-06-01 Nakamura, T.,Yamagata, Y. Visualization of mutagenic nucleotide processing by Escherichia coli MutT, a Nudix hydrolase. Proc.Natl.Acad.Sci.USA 2022 119 0 0 7X9K 35594391 Crystal structure of MutT-8-oxo-dGTP complex: Reaction for 2 hr using 10 mM Mn2+ 2022-03-15 2022-06-01 Nakamura, T.,Yamagata, Y. Visualization of mutagenic nucleotide processing by Escherichia coli MutT, a Nudix hydrolase. Proc.Natl.Acad.Sci.USA 2022 119 0 0 7X9L 35594391 Crystal structure of MutT-8-oxo-dGTP complex: Reaction for 4 hr using 10 mM Mn2+ 2022-03-15 2022-06-01 Nakamura, T.,Yamagata, Y. Visualization of mutagenic nucleotide processing by Escherichia coli MutT, a Nudix hydrolase. Proc.Natl.Acad.Sci.USA 2022 119 0 0 7V5P 35496441 The dimeric structure of G80A/H81A myoglobin 2021-08-17 2022-06-29 Xie, C.,Shimoyama, H.,Yamanaka, M.,Nagao, S.,Komori, H.,Shibata, N.,Higuchi, Y.,Shigeta, Y.,Hirota, S. Experimental and theoretical study on converting myoglobin into a stable domain-swapped dimer by utilizing a tight hydrogen bond network at the hinge region. Rsc Adv 2021 11 37604 37611 7FAG Room temperature structure of elastase with high-strength agarose hydrogel 2021-07-06 2022-07-06 Sugiyama, S.,Kakinouchi, K.,Adachi, H.,Murata, M.,Mori, Y. Room temperature structure of elastase with high-strength agarose hydrogel To Be Published 0 0 0 0 7FBM X-ray structure of high-strength hydrogel-grown FABP3 crystal soaked in 50% DMSO solution containing dibutylhydroxytoluene (BHT) 2021-07-11 2022-07-13 Sugiyama, S.,Kakinouchi, K.,Matsuoka, S.,Tsuchikawa, H.,Sonoyama, M.,Inoue, Y.,Hayashi, F.,Murata, M. X-ray structure of high-strength hydrogel-grown FABP3 crystal soaked in 50% DMSO solution containing dibutylhydroxytoluene (BHT) To Be Published 0 0 0 0 7FCX Room temperature structure of the human heart fatty acid-binding protein complexed with hexanoic acid 2021-07-15 2022-07-20 Sugiyama, S.,Kakinouchi, K.,Matsuoka, S.,Tsuchikawa, H.,Sonoyama, M.,Inoue, Y.,Hayashi, F.,Murata, M. Room temperature structure of the human heart fatty acid-binding protein complexed with hexanoic acid To Be Published 0 0 0 0 7FD7 The 1.00 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with perfluoroheptanoic acid 2021-07-16 2022-07-20 Sugiyama, S.,Kakinouchi, K.,Hara, T.,Nakano, R.,Matsuoka, S.,Tsuchikawa, H.,Sonoyama, M.,Inoue, Y.,Hayashi, F.,Murata, M. The 1.00 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with perfluoroheptanoic acid To Be Published 0 0 0 0 7FEK The 1.05 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with perfluorooctanoic acid 2021-07-21 2022-07-27 Sugiyama, S.,Kakinouchi, K.,Hara, T.,Matsuoka, S.,Tsuchikawa, H.,Sonoyama, M.,Inoue, Y.,Hayashi, F.,Murata, M. The 1.05 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with perfluorooctanoic acid To Be Published 0 0 0 0 7FEU The 0.95 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with perfluorononanoic acid 2021-07-21 2022-07-27 Sugiyama, S.,Kakinouchi, K.,Hara, T.,Matsuoka, S.,Tsuchikawa, H.,Sonoyama, M.,Inoue, Y.,Hayashi, F.,Murata, M. The 0.95 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with perfluorononanoic acid To Be Published 0 0 0 0 7FG5 Room temperature structure of the human heart fatty acid-binding protein complexed with capric acid 2021-07-26 2022-07-27 Sugiyama, S.,Kakinouchi, K.,Takahashi, J.,Matsuoka, S.,Tsuchikawa, H.,Sonoyama, M.,Inoue, Y.,Hayashi, F.,Murata, M. Room temperature structure of the human heart fatty acid-binding protein complexed with capric acid To Be Published 0 0 0 0 7V2G The 0.98 angstrom structure of the human FABP3 Y19F mutant complexed with palmitic acid 2021-08-09 2022-08-10 Sugiyama, S.,Takahashi, J.,Matsuoka, S.,Tsuchikawa, H.,Sonoyama, M.,Inoue, Y.,Hayashi, F.,Murata, M. The 0.98 angstrom structure of the human FABP3 Y19F mutant complexed with palmitic acid To Be Published 0 0 0 0 7VKD Reduced enzyme of FAD-dpendent Glucose Dehydrogenase at pH6.5 2021-09-29 2022-10-05 Nakajima, Y. Conformational change of catalytic residue in reduced enzyme of FAD-dependent Glucose Dehydrogenase at pH6.5 To Be Published 0 0 0 0 7VKF Reduced enzyme of FAD-dpendent Glucose Dehydrogenase complex with D-glucono-1,5-lactone at pH8.5 2021-09-29 2022-10-05 Nakajima, Y. Conformational change of catalytic residue in reduced enzyme of FAD-dependent Glucose Dehydrogenase at pH6.5 To Be Published 0 0 0 0 7VGK Crystal structure of Lactobacillus rhamnosus 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase KduI 2021-09-16 2022-10-19 Iwase, H.,Yamamoto, Y.,Yamada, A.,Kawai, K.,Oiki, S.,Watanabe, D.,Mikami, B.,Takase, R.,Hashimoto, W. Crystal structures of Lacticaseibacillus 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase KduI in complex with substrate analogs J.Appl.Glyosci. 2023 0 0 0 7W63 36240278 Crystal structure of minor pilin TcpB from Vibrio cholerae 2021-12-01 2022-11-09 Oki, H.,Kawahara, K.,Iimori, M.,Imoto, Y.,Nishiumi, H.,Maruno, T.,Uchiyama, S.,Muroga, Y.,Yoshida, A.,Yoshida, T.,Ohkubo, T.,Matsuda, S.,Iida, T.,Nakamura, S. Structural basis for the toxin-coregulated pilus-dependent secretion of Vibrio cholerae colonization factor. Sci Adv 2022 8 0 0 7W64 36240278 Crystal structure of minor pilin TcpB from Vibrio cholerae complexed with N-terminal peptide fragment of TcpF 2021-12-01 2022-11-09 Oki, H.,Kawahara, K.,Iimori, M.,Imoto, Y.,Nishiumi, H.,Maruno, T.,Uchiyama, S.,Muroga, Y.,Yoshida, A.,Yoshida, T.,Ohkubo, T.,Matsuda, S.,Iida, T.,Nakamura, S. Structural basis for the toxin-coregulated pilus-dependent secretion of Vibrio cholerae colonization factor. Sci Adv 2022 8 0 0 7W65 36240278 Crystal structure of minor pilin TcpB from Vibrio cholerae complexed with secreted protein TcpF 2021-12-01 2022-11-09 Oki, H.,Kawahara, K.,Iimori, M.,Imoto, Y.,Nishiumi, H.,Maruno, T.,Uchiyama, S.,Muroga, Y.,Yoshida, A.,Yoshida, T.,Ohkubo, T.,Matsuda, S.,Iida, T.,Nakamura, S. Structural basis for the toxin-coregulated pilus-dependent secretion of Vibrio cholerae colonization factor. Sci Adv 2022 8 0 0 7WF0 The 0.83 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with nervonic acid 2021-12-24 2022-12-28 Sugiyama, S.,Kakinouchi, K.,Nakano, R.,Matsuoka, S.,Tsuchikawa, H.,Sonoyama, M.,Inoue, Y.,Hayashi, F.,Murata, M. The 0.83 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with nervonic acid To Be Published 0 0 0 0 7WKG The 0.84 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with erucic acid 2022-01-09 2023-01-25 Sugiyama, S.,Kakinouchi, K.,Nakano, R.,Matsuoka, S.,Tsuchikawa, H.,Sonoyama, M.,Inoue, Y.,Hayashi, F.,Murata, M. The 0.84 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with erucic acid To Be Published 0 0 0 0 7WPU The 0.95 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with undecanoic acid 2022-01-24 2023-01-25 Sugiyama, S.,Matsuoka, S.,Tsuchikawa, H.,Sonoyama, M.,Inoue, Y.,Hayashi, F.,Murata, M. The 0.95 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with undecanoic acid To Be Published 0 0 0 0 7WPW The 0.97 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with pentadecanoic acid 2022-01-24 2023-01-25 Sugiyama, S.,Matsuoka, S.,Tsuchikawa, H.,Sonoyama, M.,Inoue, Y.,Hayashi, F.,Murata, M. The 0.97 angstrom X-ray structure of the human heart fatty acid-binding protein complexed with pentadecanoic acid To Be Published 0 0 0 0 7XUA 36882960 Structure of G9a in complex with compound 10a 2022-05-18 2023-03-29 Nishigaya, Y.,Takase, S.,Sumiya, T.,Kikuzato, K.,Sato, T.,Niwa, H.,Sato, S.,Nakata, A.,Sonoda, T.,Hashimoto, N.,Namie, R.,Honma, T.,Umehara, T.,Shirouzu, M.,Koyama, H.,Yoshida, M.,Ito, A.,Shirai, F. Discovery of Novel Substrate-Competitive Lysine Methyltransferase G9a Inhibitors as Anticancer Agents. J.Med.Chem. 2023 66 4059 4085 7YE3 38239764 Crystal structure of Lactobacillus rhamnosus 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase KduI complexed with MES 2022-07-05 2023-07-05 Iwase, H.,Yamamoto, Y.,Yamada, A.,Kawai, K.,Oiki, S.,Watanabe, D.,Mikami, B.,Takase, R.,Hashimoto, W. Crystal Structures of Lacticaseibacillus 4-Deoxy-L- threo- 5-hexosulose-uronate Ketol-isomerase KduI in Complex with Substrate Analogs. J Appl Glycosci (1999) 2023 70 99 107 8H1E 37487639 Aquifex aeolicus MutL endonuclease domain complexed with manganese ions 2022-10-03 2023-08-16 Fukui, K.,Yamamoto, T.,Murakawa, T.,Baba, S.,Kumasaka, T.,Yano, T. Catalytic mechanism of the zinc-dependent MutL endonuclease reaction. Life Sci Alliance 2023 6 0 0 8H1F 37487639 Aquifex aeolicus MutL endonuclease domain complexed with zinc ions after soaking 2022-10-03 2023-08-16 Fukui, K.,Yamamoto, T.,Murakawa, T.,Baba, S.,Kumasaka, T.,Yano, T. Catalytic mechanism of the zinc-dependent MutL endonuclease reaction. Life Sci Alliance 2023 6 0 0 8H1G 37487639 The R406T mutant form of the Aquifex aeolicus MutL endonuclease domain 2022-10-03 2023-08-16 Fukui, K.,Yamamoto, T.,Murakawa, T.,Baba, S.,Kumasaka, T.,Yano, T. Catalytic mechanism of the zinc-dependent MutL endonuclease reaction. Life Sci Alliance 2023 6 0 0 8X3H Crystal structure of iron-bound recombinant ovotransferrin N-lobe at 0.93 angstrom resolution 2023-11-13 2023-12-13 Toyoda, M.,Tanabe, A.,Mikami, B.,Hirose, M.,Mizutani, K. Crystal structure of iron-bound ovotransferrin N-lobe at atomic resolution To Be Published 0 0 0 0 8WO8 38302756 Crystal Structure of an RNA-binding protein, FAU-1, from Pyrococcus furiosus 2023-10-06 2024-02-14 Kawai, G.,Okada, K.,Baba, S.,Sato, A.,Sakamoto, T.,Kanai, A. Homo-trimeric structure of the ribonuclease for rRNA processing, FAU-1, from Pyrococcus furiosus. J.Biochem. 2024 0 0 0 8IYP Crystal structure of serine palmitoyltransferase soaked in 190 mM D-serine solution 2023-04-05 2024-04-10 Murakami, T.,Takahashi, A.,Kayatama, A.,Miyahara, I.,Kamiya, N.,Ikushiro, H.,Yano, T. Crystal structure of Serine Palmitoyltransferase from Sphingobacterium multivorum To Be Published 0 0 0 0