PDB_ID PUBMED_CID STRUCTURE TITLE DEPOSITION DATE RELEASE DATE AUTHORS CITATION TITLE JOURNAL YEAR VOLUME FIRST PAGE LAST PAGE 1IT7 12054814 Crystal structure of archaeosine tRNA-guanine transglycosylase complexed with guanine 2002-01-11 2002-05-22 Ishitani, R.,Nureki, O.,Fukai, S.,Kijimoto, T.,Nameki, N.,Watanabe, M.,Kondo, H.,Sekine, M.,Okada, N.,Nishimura, S.,Yokoyama, S. Crystal structure of archaeosine tRNA-guanine transglycosylase. J.Mol.Biol. 2002 318 665 677 1IT8 12054814 Crystal structure of archaeosine tRNA-guanine transglycosylase from Pyrococcus horikoshii complexed with archaeosine precursor, preQ0 2002-01-11 2002-05-22 Ishitani, R.,Nureki, O.,Fukai, S.,Kijimoto, T.,Nameki, N.,Watanabe, M.,Kondo, H.,Sekine, M.,Okada, N.,Nishimura, S.,Yokoyama, S. Crystal structure of archaeosine tRNA-guanine transglycosylase. J.Mol.Biol. 2002 318 665 677 1IW7 12000971 Crystal structure of the RNA polymerase holoenzyme from Thermus thermophilus at 2.6A resolution 2002-04-22 2002-06-26 Vassylyev, D.G.,Sekine, S.,Laptenko, O.,Lee, J.,Vassylyeva, M.N.,Borukhov, S.,Yokoyama, S. Crystal structure of a bacterial RNA polymerase holoenzyme at 2.6 A resolution NATURE 2002 417 712 719 1KN0 12191481 Crystal Structure of the human Rad52 protein 2001-12-18 2002-09-04 Kagawa, W.,Kurumizaka, H.,Ishitani, R.,Fukai, S.,Nureki, O.,Shibata, T.,Yokoyama, S. Crystal structure of the homologous-pairing domain from the human Rad52 recombinase in the undecameric form. Mol.Cell 2002 10 359 371 1IWQ 12577052 Crystal Structure of MARCKS calmodulin binding domain peptide complexed with Ca2+/Calmodulin 2002-05-31 2003-03-11 Yamauchi, E.,Nakatsu, T.,Matsubara, M.,Kato, H.,Taniguchi, H. Crystal structure of a MARCKS peptide containing the calmodulin-binding domain in complex with Ca(2+)-calmodulin NAT.STRUCT.BIOL. 2003 10 226 231 1IW1 14645223 Crystal structure of a heme oxygenase (HmuO) from Corynebacterium diphtheriae complexed with heme in the ferrous state 2002-04-04 2003-04-04 Hirotsu, S.,Chu, G.C.,Unno, M.,Lee, D.S.,Yoshida, T.,Park, S.Y.,Shiro, Y.,Ikeda-Saito, M. The crystal structures of the ferric and ferrous forms of the heme complex of HmuO, a heme oxygenase of Corynebacterium diphtheriae. J.Biol.Chem. 2004 279 11937 11947 1IW0 14645223 Crystal structure of a heme oxygenase (HmuO) from Corynebacterium diphtheriae complexed with heme in the ferric state 2002-04-04 2003-04-08 Hirotsu, S.,Chu, G.C.,Unno, M.,Lee, D.S.,Yoshida, T.,Park, S.Y.,Shiro, Y.,Ikeda-Saito, M. The crystal structures of the ferric and ferrous forms of the heme complex of HmuO, a heme oxygenase of Corynebacterium diphtheriae. J.Biol.Chem. 2004 279 11937 11947 1IZN 12660160 Crystal Structure of Actin Filament Capping Protein CapZ 2002-10-10 2003-04-08 Yamashita, A.,Maeda, K.,Maeda, Y. Crystal structure of CapZ: structural basis for actin filament barbed end capping EMBO J. 2003 22 1529 1538 1K1W 12618437 Crystal structure of 4-alpha-glucanotransferase from thermococcus litoralis 2001-09-26 2003-06-17 Imamura, H.,Fushinobu, S.,Yamamoto, M.,Kumasaka, T.,Jeon, B.S.,Wakagi, T.,Matsuzawa, H. Crystal structures of 4-alpha-glucanotransferase from Thermococcus litoralis and its complex with an inhibitor J.BIOL.CHEM. 2003 278 19378 19386 1K1X 12618437 Crystal structure of 4-alpha-glucanotransferase from thermococcus litoralis 2001-09-26 2003-06-17 Imamura, H.,Fushinobu, S.,Yamamoto, M.,Kumasaka, T.,Jeon, B.S.,Wakagi, T.,Matsuzawa, H. Crystal structures of 4-alpha-glucanotransferase from Thermococcus litoralis and its complex with an inhibitor J.BIOL.CHEM. 2003 278 19378 19386 1UD2 12719434 Crystal structure of calcium-free alpha-amylase from Bacillus sp. strain KSM-K38 (AmyK38) 2003-04-28 2003-07-22 Nonaka, T.,Fujihashi, M.,Kita, A.,Hagihara, H.,Ozaki, K.,Ito, S.,Miki, K. Crystal structure of calcium-free alpha-amylase from Bacillus sp. strain KSM-K38 (AmyK38) and its sodium ion binding sites J.Biol.Chem. 2003 278 24818 24824 1UD3 12719434 Crystal structure of AmyK38 N289H mutant 2003-04-28 2003-07-22 Nonaka, T.,Fujihashi, M.,Kita, A.,Hagihara, H.,Ozaki, K.,Ito, S.,Miki, K. Crystal structure of calcium-free alpha-amylase from Bacillus sp. strain KSM-K38 (AmyK38) and its sodium ion binding sites J.Biol.Chem. 2003 278 24818 24824 1IXL 14997554 Crystal structure of uncharacterized protein PH1136 from Pyrococcus horikoshii 2002-06-27 2003-09-09 Tajika, Y.,Sakai, N.,Tanaka, Y.,Yao, M.,Watanabe, N.,Tanaka, I. Crystal structure of conserved protein PH1136 from Pyrococcus horikoshii. Proteins 2004 55 210 213 1L7Z 14765114 Crystal structure of Ca2+/Calmodulin complexed with myristoylated CAP-23/NAP-22 peptide 2002-03-18 2003-09-16 Matsubara, M.,Nakatsu, T.,Kato, H.,Taniguchi, H. Crystal structure of a myristoylated CAP-23/NAP-22 N-terminal domain complexed with Ca2+/calmodulin EMBO J. 2004 23 712 718 1UC8 12963379 Crystal structure of a lysine biosynthesis enzyme, Lysx, from thermus thermophilus HB8 2003-04-09 2003-09-23 Sakai, H.,Vassylyeva, M.N.,Matsuura, T.,Sekine, S.,Gotoh, K.,Nishiyama, M.,Terada, T.,Shirouzu, M.,Kuramitsu, S.,Vassylyev, D.G.,Yokoyama, S. Crystal Structure of a Lysine Biosynthesis Enzyme, LysX, from Thermus thermophilus HB8 J.Mol.Biol. 2003 332 729 740 1UFR Crystal Structure of TT1027 from Thermus thermophilus HB8 2003-06-08 2003-12-08 Matsuura, T.,Sakai, H.,Terada, T.,Shirouzu, M.,Kuramitsu, S.,Yokoyama, S. Crystal Structure of TT1027 from Thermus thermophilus HB8 To be Published 0 0 0 0 1Q3S 14729342 Crystal structure of the chaperonin from Thermococcus strain KS-1 (FormIII crystal complexed with ADP) 2003-07-31 2004-01-27 Shomura, Y.,Yoshida, T.,Iizuka, R.,Maruyama, T.,Yohda, M.,Miki, K. Crystal Structures of the Group II Chaperonin from Thermococcus strain KS-1: Steric Hindrance by the Substituted Amino Acid, and Inter-subunit Rearrangement between Two Crystal Forms. J.Mol.Biol. 2004 335 1265 1278 1J1Y 16061252 Crystal Structure of PaaI from Thermus thermophilus HB8 2002-12-24 2004-02-17 Kunishima, N.,Asada, Y.,Sugahara, M.,Ishijima, J.,Nodake, Y.,Sugahara, M.,Miyano, M.,Kuramitsu, S.,Yokoyama, S.,Sugahara, M. A Novel Induced-fit Reaction Mechanism of Asymmetric Hot Dog Thioesterase PaaI J.Mol.Biol. 2005 352 212 228 1SMY 15109491 Structural basis for transcription regulation by alarmone ppGpp 2004-03-10 2004-05-18 Artsimovitch, I.,Patlan, V.,Sekine, S.,Vassylyeva, M.N.,Hosaka, T.,Ochi, K.,Yokoyama, S.,Vassylyev, D.G. Structural basis for transcription regulation by alarmone ppGpp Cell(Cambridge,Mass.) 2004 117 299 310 1UEB 15210970 Crystal structure of translation elongation factor P from Thermus thermophilus HB8 2003-05-09 2004-05-25 Hanawa-Suetsugu, K.,Sekine, S.,Sakai, H.,Hori-Takemoto, C.,Terada, T.,Unzai, S.,Tame, J.R.H.,Kuramitsu, S.,Shirouzu, M.,Yokoyama, S. Crystal structure of elongation factor P from Thermus thermophilus HB8 Proc.Natl.Acad.Sci.USA 2004 101 9595 9600 1VFJ 15629661 Crystal structure of TT1020 from Thermus thermophilus HB8 2004-04-15 2005-01-11 Sakai, H.,Wang, H.,Takemoto-Hori, C.,Kaminishi, T.,Yamaguchi, H.,Kamewari, Y.,Terada, T.,Kuramitsu, S.,Shirouzu, M.,Yokoyama, S. Crystal structures of the signal transducing protein GlnK from Thermus thermophilus HB8 J.STRUCT.BIOL. 2005 149 99 110 1V8E Crystal Structure of Glycerophosphoryl Diester Phosphodiesterase from Thermus thermophilus HB8 2004-01-05 2005-01-18 Ishijima, J.,Ida, K.,Yutani, K.,Miyano, M. Crystal structure of glycerophosphoryl diester phosphodiesterase from Thermus thermophilus HB8 To be Published 0 0 0 0 1WXR 15728184 Crystal structure of Heme Binding protein, an autotransporter hemoglobine protease from pathogenic Escherichia coli 2005-01-31 2005-03-01 Otto, B.R.,Sijbrandi, R.,Luirink, J.,Oudega, B.,Heddle, J.G.,Mizutani, K.,Park, S.-Y.,Tame, J.R.H. Crystal structure of heme binding protein, an autotransporter hemoglobin protease from pathogenic escherichia coli J.Biol.Chem. 2005 280 17339 17345 1VBH 15667207 Pyruvate Phosphate Dikinase with bound Mg-PEP from Maize 2004-02-26 2005-03-08 Nakanishi, T.,Nakatsu, T.,Matsuoka, M.,Sakata, K.,Kato, H. Crystal structures of pyruvate phosphate dikinase from maize revealed an alternative conformation in the swiveling-domain motion Biochemistry 2005 44 1136 1144 1WDT Crystal structure of ttk003000868 from Thermus thermophilus HB8 2004-05-17 2005-05-17 Wang, H.,Takemoto-Hori, C.,Murayama, K.,Sekine, S.,Terada, T.,Shirouzu, M.,Kuramitsu, S.,Yokoyama, S. Crystal structure of ttk003000868 from Thermus thermophilus HB8 To be published 0 0 0 0 1WM6 16061252 Crystal structure of TT0310 protein from Thermus thermophilus HB8 2004-07-04 2005-07-05 Kunishima, N.,Asada, Y.,Sugahara, M.,Ishijima, J.,Nodake, Y.,Sugahara, M.,Miyano, M.,Kuramitsu, S.,Yokoyama, S.,Sugahara, M. A Novel Induced-fit Reaction Mechanism of Asymmetric Hot Dog Thioesterase PaaI J.Mol.Biol. 2005 352 212 228 1WM9 16169877 Structure of GTP cyclohydrolase I from Thermus thermophilus HB8 2004-07-05 2005-07-19 Tanaka, Y.,Nakagawa, N.,Kuramitsu, S.,Yokoyama, S.,Masui, R. Novel Reaction Mechanism of GTP Cyclohydrolase I. High-Resolution X-Ray Crystallography of Thermus thermophilus HB8 Enzyme Complexed with a Transition State Analogue, the 8-Oxoguanine Derivative. J.Biochem.(Tokyo) 2005 138 263 275 2COV 16061225 Crystal structure of CBM31 from beta-1,3-xylanase 2005-05-18 2005-09-13 Hashimoto, H.,Tamai, Y.,Okazaki, F.,Tamaru, Y.,Shimizu, T.,Araki, T.,Sato, M. The first crystal structure of a family 31 carbohydrate-binding module with affinity to beta-1,3-xylan Febs Lett. 2005 579 4324 4328 1WRV Crystal Structure of T.th.HB8 Branched-Chain Amino Acid Aminotransferase 2004-10-27 2005-10-18 Goto, M.,Miyahara, I.,Hirotsu, K. Crystal Structure of T.th.HB8 Branched-Chain Amino Acid Aminotransferase TO BE PUBLISHED 0 0 0 0 1WRK Crystal structure of the N-terminal domain of human cardiac troponin C in complex with trifluoperazine (orthrombic crystal form) 2004-10-20 2006-01-24 Takeda, S.,Igarashi, T.,Oishi, Y.,Mori, H. Crystal structure of the N-terminal domain of human cardiac troponin C in complex with trifluoperazine To be Published 0 0 0 0 1WRL Crystal structure of the N-terminal domain of human cardiac troponin C in complex with trifluoperazine (monoclinic crystal form) 2004-10-20 2006-01-24 Takeda, S.,Igarashi, T.,Oishi, Y.,Mori, H. Crystal structure of the N-terminal domain of human cardiac troponin C in complex with trifluoperazine To be Published 0 0 0 0 1X03 16763557 Crystal structure of endophilin BAR domain 2005-03-14 2006-05-02 Masuda, M.,Takeda, S.,Sone, M.,Ohki, T.,Mori, H.,Kamioka, Y.,Mochizuki, N. Endophilin BAR domain drives membrane curvature by two newly identified structure-based mechanisms Embo J. 2006 25 2889 2897 1X04 16763557 Crystal structure of endophilin BAR domain (mutant) 2005-03-14 2006-05-02 Masuda, M.,Takeda, S.,Sone, M.,Ohki, T.,Mori, H.,Kamioka, Y.,Mochizuki, N. Endophilin BAR domain drives membrane curvature by two newly identified structure-based mechanisms Embo J. 2006 25 2889 2897 2DC3 16699195 Crystal structure of human cytoglobin at 1.68 angstroms resolution 2005-12-21 2006-05-23 Makino, M.,Sugimoto, H.,Sawai, H.,Kawada, N.,Yoshizato, K.,Shiro, Y. High-resolution structure of human cytoglobin: identification of extra N- and C-termini and a new dimerization mode. Acta Crystallogr.,Sect.D 2006 62 671 677 2ERO 16688218 Crystal structure of vascular apoptosis-inducing protein-1(orthorhombic crystal form) 2005-10-25 2006-06-20 Takeda, S.,Igarashi, T.,Mori, H.,Araki, S. Crystal structures of VAP1 reveal ADAMs' MDC domain architecture and its unique C-shaped scaffold Embo J. 2006 25 2388 2396 2ERQ 16688218 Crystal structure of vascular apoptosis-inducing protein-1(tetragonal crystal form) 2005-10-25 2006-06-20 Takeda, S.,Igarashi, T.,Mori, H.,Araki, S. Crystal structures of VAP1 reveal ADAMs' MDC domain architecture and its unique C-shaped scaffold Embo J. 2006 25 2388 2396 2PCJ Crystal structure of ABC transporter (aq_297) From Aquifex Aeolicus VF5 2007-03-30 2007-10-02 Jeyakanthan, J.,Kanaujia, S.P.,Vasuki Ranjani, C.,Sekar, K.,Nakagawa, N.,Ebihara, A.,Kuramitsu, S.,Shinkai, A.,Shiro, Y.,Yokoyama, S. Crystal structure of ABC transporter (aq_297) From Aquifex Aeolicus VF5 To be Published 0 0 0 0 2PCN Crystal structure of S-adenosylmethionine: 2-dimethylmenaquinone methyltransferase (gk_1813) from geobacillus kaustophilus HTA426 2007-03-30 2007-10-02 Jeyakanthan, J.,Kanaujia, S.P.,Rafi, Z.A.,Sekar, K.,Agari, Y.,Ebihara, A.,Kuramitsu, S.,Shinkai, A.,Shiro, Y.,Yokoyama, S. Crystal structure of S-adenosylmethionine:2-dimethylmenaquinone methyltransferase (gk_1813) from geobacillus kaustophilus HTA426 To be Published 0 0 0 0 2YW3 Crystal Structure Analysis of the 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-deoxyphosphogluconate aldolase from TTHB1 2007-04-19 2007-10-23 Kawano, Y.,Hashimoto, K.,Kamiya, N. Crystal Structure Analysis of the 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3-deoxyphosphogluconate aldolase from TTHB1 To be published 0 0 0 0 2ZE5 18258747 Crystal Structure of adenosine phosphate-isopentenyltransferase 2007-12-06 2008-02-05 Sugawara, H.,Ueda, N.,Kojima, M.,Makita, N.,Yamaya, T.,Sakakibara, H. Structural insight into the reaction mechanism and evolution of cytokinin biosynthesis. Proc.Natl.Acad.Sci.Usa 2008 105 2734 2739 2ZE6 18258747 Crystal Structure of adenosine phosphate-isopentenyltransferase complexed with substrate analog, DMASPP 2007-12-06 2008-02-05 Sugawara, H.,Ueda, N.,Kojima, M.,Makita, N.,Yamaya, T.,Sakakibara, H. Structural insight into the reaction mechanism and evolution of cytokinin biosynthesis. Proc.Natl.Acad.Sci.Usa 2008 105 2734 2739 2ZE7 18258747 Crystal Structure of adenosine phosphate-isopentenyltransferase complexed with zinc ion and substrate analog, DMASPP 2007-12-06 2008-02-05 Sugawara, H.,Ueda, N.,Kojima, M.,Makita, N.,Yamaya, T.,Sakakibara, H. Structural insight into the reaction mechanism and evolution of cytokinin biosynthesis. Proc.Natl.Acad.Sci.Usa 2008 105 2734 2739 2ZE8 18258747 Crystal Structure of adenosine phosphate-isopentenyltransferase complexed with diphosphate 2007-12-06 2008-02-05 Sugawara, H.,Ueda, N.,Kojima, M.,Makita, N.,Yamaya, T.,Sakakibara, H. Structural insight into the reaction mechanism and evolution of cytokinin biosynthesis. Proc.Natl.Acad.Sci.Usa 2008 105 2734 2739 3CM0 Crystal structure of adenylate kinase from Thermus thermophilus HB8 2008-03-20 2008-09-23 Nakagawa, N.,Kondo, N.,Masui, R.,Yokoyama, S.,Kuramitsu, S. Crystal structure of adenylate kinase from Thermus thermophilus HB8 To be Published 0 0 0 0 3W8N Open form structure of CMP kinase in complex with CMP from Thermus thermophilus HB8 2013-03-19 2013-09-25 Mega, R.,Nakagawa, N.,Masui, R.,Kuramitsu, S. Crystal structure of CMP kinase: insights into initial substrate recognition and reaction mechanisms To be Published 0 0 0 0 3W90 Crystal structure of CMP kinase from Thermus thermophilus HB8 2013-03-22 2013-09-25 Mega, R.,Nakagawa, N.,Masui, R.,Kuramitsu, S. Crystal structure of CMP kinase: insights into initial substrate recognition and reaction mechanisms To be Published 0 0 0 0 4OIW 24704201 Structural and kinetic bases for the metal preference of the M18 aminopeptidase from Pseudomonas aeruginosa 2014-01-20 2014-04-02 Nguyen, D.D.,Pandian, R.,Kim, D.,Ha, S.C.,Yoon, H.J.,Kim, K.S.,Yun, K.H.,Kim, J.H.,Kim, K.K. Structural and kinetic bases for the metal preference of the M18 aminopeptidase from Pseudomonas aeruginosa Biochem.Biophys.Res.Commun. 2014 447 101 107 3WU1 25083921 Crystal structure of the ETS1-RUNX1-DNA ternary complex 2014-04-21 2014-08-20 Shiina, M.,Hamada, K.,Inoue-Bungo, T.,Shimamura, M.,Uchiyama, A.,Baba, S.,Sato, K.,Yamamoto, M.,Ogata, K. A novel allosteric mechanism on protein-DNA interactions underlying the phosphorylation-dependent regulation of Ets1 target gene expressions. J.Mol.Biol. 2015 427 1655 1669